PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009150822.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 333aa    MW: 37500 Da    PI: 9.7414
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009150822.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.59.2e-1572131155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  XP_009150822.1  72 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 131
                     57*******************666664478446**********99*************98 PP
2AP249.97.7e-16176225355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  XP_009150822.1 176 YRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 225
                     9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.67E-2172141No hitNo description
SuperFamilySSF541711.24E-1672140IPR016177DNA-binding domain
PfamPF008471.1E-1172131IPR001471AP2/ERF domain
PROSITE profilePS5103218.75573139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-1573139IPR001471AP2/ERF domain
SMARTSM003801.5E-2673145IPR001471AP2/ERF domain
PRINTSPR003672.0E-67485IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-18174234IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-18175233IPR001471AP2/ERF domain
PROSITE profilePS5103219.269175233IPR001471AP2/ERF domain
SMARTSM003803.3E-30175239IPR001471AP2/ERF domain
PfamPF008473.7E-10176225IPR001471AP2/ERF domain
PRINTSPR003672.0E-6215235IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
VAPRKEQGGV KEGCTKEGAL SLAVNNTDGE RVKSSRKVTV SKKEAKAVET TSTDDSTKKK  60
KKVVESFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ ARKGRQVYLG GYDKEDKAAR  120
AYDLAALKYW GPAATTNFQI ASYSKELEEM NHMTKQEFIA SIRRKSSGFS RGASMYRGVT  180
RHHQQGRWQA RIGRVAGNKD LYLGTFATEE EAAEAYDIAA IKFRGINAVT NFEMNRYDVE  240
AIMNSSFPVG GSAVKRHKQL SLESPPPPTD DHNIQQLLLP SSSVELDPNS IPCGIPFDPS  300
VLYHPQNFFQ HYPDPTVPMN QADQFFMWSN QSY
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Confined to the central region of inflorescence ane floral meristems, progressively restricted to the innermost cells of the dome. Also detected in developing stamen locules and later in sporogonous cells within locules. In carpel primordia, found in placenta and in young ovule primordia. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009150822.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534040.0AK353404.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-30-G24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150822.20.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL7 isoform X2
RefseqXP_018514933.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL7 isoform X1
SwissprotQ6J9N81e-165AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLA0A397Z0E90.0A0A397Z0E9_BRACM; Uncharacterized protein
TrEMBLM4E6J00.0M4E6J0_BRARP; Uncharacterized protein
STRINGBra024394.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.11e-158AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]