PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009150735.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 84aa MW: 9672.71 Da PI: 10.0991 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.2 | 5e-10 | 15 | 60 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ d+++ a +++ ++ +W +ar +g g++++++k r+ XP_009150735.1 15 SSWTAKQDKQFEMALAKFEKDtpdRWQNVARVVG-GKSAEEVKRRYE 60 58********************************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.467 | 12 | 67 | IPR017884 | SANT domain |
SMART | SM00717 | 3.3E-9 | 13 | 65 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.3E-13 | 15 | 71 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-8 | 15 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-5 | 17 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.99E-7 | 17 | 63 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 84 aa Download sequence Send to blast |
MASNSIISTS RSSTSSWTAK QDKQFEMALA KFEKDTPDRW QNVARVVGGK SAEEVKRRYE 60 LLVRDVNDIE SGRHDPQPRY RNTN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 7e-24 | 7 | 84 | 1 | 77 | RADIALIS |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009150735.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009150735.1 | 6e-57 | PREDICTED: protein RADIALIS-like 4 | ||||
Swissprot | Q1G3C4 | 8e-35 | RADL4_ARATH; Protein RADIALIS-like 4 | ||||
TrEMBL | A0A078GVR0 | 1e-54 | A0A078GVR0_BRANA; BnaA06g25300D protein | ||||
STRING | Bo3g094110.1 | 1e-42 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18328.1 | 2e-36 | RAD-like 4 |