PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009150669.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 368aa MW: 41500.3 Da PI: 5.8412 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.6 | 8.8e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+d+++ G+g +W + ++++g++R++k+c++rw++yl XP_009150669.1 14 KGPWSPEEDAKLKDYIENNGTGgNWIALPQKIGLRRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38.5 | 2.7e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ ++ G++ W+ Ia+ ++ gRt++++k++w++ XP_009150669.1 69 GGFSEEEDNIICNLYVTIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.829 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.35E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.62E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.385 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.31E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 368 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE NNGTGGNWIA LPQKIGLRRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC NLYVTIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLNK 120 QRKEYQEARM KQDMVMIKRQ EQGQGQSNAS RDLYSNSMFG SSPWPLLPQL PSPHHQVPLV 180 MMEPTSCNYY QMTPSCNFEQ KPLITLKNMV KTEEEPERTN PDHHHPEYSI TNPFDFSFSQ 240 LLLDPNYYLE PVGGEGELAI TSSSTNSPLP NTSADHHQQQ QEILQWFGSS NFQTEAVNDM 300 FLSNNDIANL ETNENTKFYG NLPVAGAAAA LAGGTTSTSA DQSTISWEDI TSLVNSDDAS 360 YFNGPNHL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-23 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates in an adaxial ball-shaped set of cells in three to five cell layers around the L3 layer of the shoot apical meristem (SAM) in youg plantlets. In the inflorescence meristem, confined to the axils of flower primordia. {ECO:0000269|PubMed:16461581}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16461581}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009150669.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK227472 | 0.0 | AK227472.1 Arabidopsis thaliana mRNA for transcription factor like protein, complete cds, clone: RAFL14-10-M08. | |||
GenBank | AY519647 | 0.0 | AY519647.1 Arabidopsis thaliana MYB transcription factor (At5g65790) mRNA, complete cds. | |||
GenBank | BT005994 | 0.0 | BT005994.1 Arabidopsis thaliana At5g65790 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009150669.1 | 0.0 | PREDICTED: transcription factor RAX3-like | ||||
Swissprot | Q9M2Y9 | 1e-122 | RAX3_ARATH; Transcription factor RAX3 | ||||
TrEMBL | M4E6L5 | 0.0 | M4E6L5_BRARP; Uncharacterized protein | ||||
STRING | Bra024419.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2941 | 25 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G65790.1 | 1e-177 | myb domain protein 68 |
Publications ? help Back to Top | |||
---|---|---|---|
|