PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009150649.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 306aa    MW: 33936.5 Da    PI: 8.7865
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009150649.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.11.6e-373392261
          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                     +++lkcprC+s+ntkfCyynn slsqPr+fCkaCrryWt+GGalrnvP+Ggg+rk kks
  XP_009150649.1 33 DQQTLKCPRCKSSNTKFCYYNNSSLSQPRHFCKACRRYWTRGGALRNVPIGGGCRKTKKS 92
                    57899***************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.9E-323591IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.5653791IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103975IPR003851Zinc finger, Dof-type
ProDomPD0074785.0E-243991IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSSHTNLHSP KPDHRTTGTP HTKKPPSSST SQDQQTLKCP RCKSSNTKFC YYNNSSLSQP  60
RHFCKACRRY WTRGGALRNV PIGGGCRKTK KSFKPNAVAT PSSSQRFFSS IMEDSSKFFP  120
PPTTMDFQLA GLSLNKINDL QLMNNQEVLG LRPMDQVETT PVDVGSGLSL MGFGDYSNNN  180
HSTGTFTTAG GTDGNLATSI ETLSSLNQDL HWRLQQQRMA MLFGSSKEET VVVERPQPIL  240
YRNLDIVNSS QSPTKKGDNQ TEWYFGNNNN NNDNEGVANN NNTGGSEQWN NGVQAWTDLN  300
HYDALP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009150649.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150649.10.0PREDICTED: dof zinc finger protein DOF5.7
SwissprotQ9LSL61e-169DOF57_ARATH; Dof zinc finger protein DOF5.7
TrEMBLM4E6J50.0M4E6J5_BRARP; Uncharacterized protein
STRINGBra024399.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49502850
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.11e-141Dof family protein
Publications ? help Back to Top
  1. Castorina G,Fox S,Tonelli C,Galbiati M,Conti L
    A novel role for STOMATAL CARPENTER 1 in stomata patterning.
    BMC Plant Biol., 2016. 16(1): p. 172
    [PMID:27484174]