PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009150649.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 306aa MW: 33936.5 Da PI: 8.7865 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.1 | 1.6e-37 | 33 | 92 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++lkcprC+s+ntkfCyynn slsqPr+fCkaCrryWt+GGalrnvP+Ggg+rk kks XP_009150649.1 33 DQQTLKCPRCKSSNTKFCYYNNSSLSQPRHFCKACRRYWTRGGALRNVPIGGGCRKTKKS 92 57899***************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.9E-32 | 35 | 91 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.565 | 37 | 91 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 39 | 75 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 5.0E-24 | 39 | 91 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010052 | Biological Process | guard cell differentiation | ||||
GO:0010118 | Biological Process | stomatal movement | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1902066 | Biological Process | regulation of cell wall pectin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MSSHTNLHSP KPDHRTTGTP HTKKPPSSST SQDQQTLKCP RCKSSNTKFC YYNNSSLSQP 60 RHFCKACRRY WTRGGALRNV PIGGGCRKTK KSFKPNAVAT PSSSQRFFSS IMEDSSKFFP 120 PPTTMDFQLA GLSLNKINDL QLMNNQEVLG LRPMDQVETT PVDVGSGLSL MGFGDYSNNN 180 HSTGTFTTAG GTDGNLATSI ETLSSLNQDL HWRLQQQRMA MLFGSSKEET VVVERPQPIL 240 YRNLDIVNSS QSPTKKGDNQ TEWYFGNNNN NNDNEGVANN NNTGGSEQWN NGVQAWTDLN 300 HYDALP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009150649.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009150649.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.7 | ||||
Swissprot | Q9LSL6 | 1e-169 | DOF57_ARATH; Dof zinc finger protein DOF5.7 | ||||
TrEMBL | M4E6J5 | 0.0 | M4E6J5_BRARP; Uncharacterized protein | ||||
STRING | Bra024399.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4950 | 28 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65590.1 | 1e-141 | Dof family protein |
Publications ? help Back to Top | |||
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