PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009150611.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 308aa    MW: 35007.4 Da    PI: 6.0773
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009150611.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-171663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd++l+ +++++G ++W++ ++  g++R++k+c++rw +yl
   XP_009150611.1 16 KGPWLPEEDDKLISYIHKHGHRSWSALPKLAGLNRCGKSCRLRWTNYL 63
                     79********************************************97 PP
2Myb_DNA-binding54.13.7e-1769114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+e ++++++ lG++ W+ Ia++++ gRt++++k++w+++l
   XP_009150611.1  69 RGKFSQEEEETILNLHAVLGNK-WSMIASHLQ-GRTDNEIKNFWNTHL 114
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.0331163IPR017930Myb domain
SuperFamilySSF466898.98E-2914110IPR009057Homeodomain-like
SMARTSM007173.1E-141565IPR001005SANT/Myb domain
PfamPF002491.1E-161663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-241770IPR009057Homeodomain-like
CDDcd001675.20E-111863No hitNo description
PROSITE profilePS5129426.92664118IPR017930Myb domain
SMARTSM007171.2E-1568116IPR001005SANT/Myb domain
PfamPF002493.9E-1569114IPR001005SANT/Myb domain
CDDcd001672.03E-1171114No hitNo description
Gene3DG3DSA:1.10.10.602.6E-2771119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGRSPLSADE TGTLKKGPWL PEEDDKLISY IHKHGHRSWS ALPKLAGLNR CGKSCRLRWT  60
NYLRPDIKRG KFSQEEEETI LNLHAVLGNK WSMIASHLQG RTDNEIKNFW NTHLKKKLIQ  120
MGFDPMTHRP RTDDIFSSLS QLMSLSNLRG LVDLQQQVPF EDQQALLNLQ GEMAKLQLLN  180
YLLQAPPLAM SSSNNINPNE LNILNLLTKE NYNTNNLDLT SCLQDFNNNL PSLKTLEENH  240
FSQNNSPIWS HEPPSLNQTM LPSHDPSPLG DDLVLNQASS SHEQEVAATG SVDWPDHLFD  300
DSMFTYQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27141185108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves, stems and flowers. {ECO:0000269|PubMed:24902892}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009150611.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150611.10.0PREDICTED: transcription factor MYB39
SwissprotQ9FJP21e-155MYB53_ARATH; Transcription factor MYB53
TrEMBLM4E6G40.0M4E6G4_BRARP; Uncharacterized protein
STRINGBra024368.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65230.11e-157myb domain protein 53
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]