PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009150559.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 201aa MW: 22789.9 Da PI: 5.6091

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009150559.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	87.3	1.3e-27	108	166	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K+vk++++ r+YY+C+ +gC+vkk+ver+ ed ++v++tY g Hnhe XP_009150559.1 108 MDDGYKWRKYGKKSVKNNTNKRNYYKCSNEGCTVKKRVERDGEDASYVITTYDGVHNHE 166 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.0E-30	95	168	IPR003657	WRKY domain
SuperFamily	SSF118290	3.53E-26	100	168	IPR003657	WRKY domain
PROSITE profile	PS50811	28.793	103	168	IPR003657	WRKY domain
SMART	SM00774	1.1E-30	108	167	IPR003657	WRKY domain
Pfam	PF03106	7.5E-22	109	166	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MNISQNPSPN FPFFSDENFI NPFMDNFDFT DLIFDVNEGG NNNGFIQEET SSPISIVSSE 60 TFTGESGGSG SGITTSSKKE PTRGSKDGET KEMGHRVAFR TRSKIDVMDD GYKWRKYGKK 120 SVKNNTNKRN YYKCSNEGCT VKKRVERDGE DASYVITTYD GVHNHESPSH VYYNDMVLSY 180 DHDSWNQHSL LQAIQQISPP Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-23	98	169	7	78	Probable WRKY transcription factor 4
2lex_A	5e-23	98	169	7	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009150559.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009150559.1	1e-149	PREDICTED: probable WRKY transcription factor 51 isoform X2
Swissprot	Q93WU9	1e-111	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A397Z4M1	1e-132	A0A397Z4M1_BRACM; Uncharacterized protein
TrEMBL	M4E6C4	1e-132	M4E6C4_BRARP; Uncharacterized protein
STRING	Bra024328.1-P	1e-133	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	1e-100	WRKY DNA-binding protein 51

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]