PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009150504.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 139aa    MW: 15742.9 Da    PI: 4.7815
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009150504.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.67.3e-2141135298
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     f++++++++lk++ l+lp   ++   ++k++ ++++l +++g+sW+v l+++  +g+ ++++GW++F++an+   gD +vF ++g+ ++++++ v
  XP_009150504.1  41 FQAEVTASNLKEDKLYLPEGATTCTALNKQC-QEIILVNKEGNSWTVSLRFSEADGM-YIRRGWRKFCRANRCAIGDLFVFNVVGDGKTTPLMCV 133
                     5778899***********9998555888766.6****************99999877.5899************************999999999 PP

                     E- CS
              B3  97 fr 98 
                     + 
  XP_009150504.1 134 CP 135
                     96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.65E-1740128IPR015300DNA-binding pseudobarrel domain
CDDcd100172.20E-1440119No hitNo description
Gene3DG3DSA:2.40.330.101.6E-1840128IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.90240137IPR003340B3 DNA binding domain
SMARTSM010198.0E-1841137IPR003340B3 DNA binding domain
PfamPF023626.2E-2041135IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MVFHVTPFGP SCCEIQYTHP HIIKEEADAD DVPSFSFDYC FQAEVTASNL KEDKLYLPEG  60
ATTCTALNKQ CQEIILVNKE GNSWTVSLRF SEADGMYIRR GWRKFCRANR CAIGDLFVFN  120
VVGDGKTTPL MCVCPEREE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009150504.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325771e-133AC232577.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS012H21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150504.11e-102PREDICTED: B3 domain-containing protein REM10-like
TrEMBLA0A3P5Z7K59e-98A0A3P5Z7K5_BRACM; Uncharacterized protein
STRINGBra012500.1-P3e-97(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.17e-29B3 family protein