PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009150476.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 344aa    MW: 38667.2 Da    PI: 4.5634
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009150476.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.59.6e-4861341129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtd elv +yLk+kv gkk+ + ++i+evdiyk+eP dLp k ++++++ +wyfF++r kky++g ++nr+t+sgyWk+tgkd++v+
  XP_009150476.1   6 LAPGFRFHPTDVELVRYYLKRKVLGKKFMT-NAIAEVDIYKFEPLDLPeKsCLRTGDLKWYFFCPRLKKYPNGGKANRSTESGYWKTTGKDRDVT 99 
                     579************************988.89**************95357788889************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       ++e+vg  +tL+f+ g++p+ge+tdWvmheyrle
  XP_009150476.1 100 Y-NDEVVGKIRTLIFHYGKTPRGERTDWVMHEYRLE 134
                     *.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-573156IPR003441NAC domain
PROSITE profilePS5100554.2556156IPR003441NAC domain
PfamPF023651.9E-258133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGKNSLAPGF RFHPTDVELV RYYLKRKVLG KKFMTNAIAE VDIYKFEPLD LPEKSCLRTG  60
DLKWYFFCPR LKKYPNGGKA NRSTESGYWK TTGKDRDVTY NDEVVGKIRT LIFHYGKTPR  120
GERTDWVMHE YRLEDRTLEQ RNIPQDTYVI CKLFKKNGLG PRHGSEYGAP FKDEDWSDEE  180
DIESLDPGPN KETSVVASAS HSHRPEDCIT GVISESCVVS DAPQLTAATV LPPIASDVVA  240
HTPLSSSSPL IEVPHAVQDD DDFYSMLDLF VVDNDESLHL GGLNNQYEVR QETEVPAVEE  300
AHVCLEDVDM SWIQDLSDEL FVGIEELIEP STPPAAQGGH PGDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-45515716166NO APICAL MERISTEM PROTEIN
1ut4_B1e-45515716166NO APICAL MERISTEM PROTEIN
1ut7_A1e-45515716166NO APICAL MERISTEM PROTEIN
1ut7_B1e-45515716166NO APICAL MERISTEM PROTEIN
3ulx_A1e-45515714169Stress-induced transcription factor NAC1
4dul_A1e-45515716166NAC domain-containing protein 19
4dul_B1e-45515716166NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009150476.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382770.0KF738277.1 Brassica napus NAC transcription factor 103 (NAC103.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150476.10.0PREDICTED: NAC domain-containing protein 82
SwissprotQ9FY821e-118NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A078HYW90.0A0A078HYW9_BRANA; BnaA06g23210D protein
TrEMBLA0A3P5YJY80.0A0A3P5YJY8_BRACM; Uncharacterized protein
TrEMBLM4E6590.0M4E659_BRARP; Uncharacterized protein
STRINGBra024263.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36922562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.11e-149NAC domain containing protein 103
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]