PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009150381.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 538aa    MW: 61307.1 Da    PI: 7.1795
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009150381.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3958.1e-1211635331374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     +++lL++cA+av+s d+++a + L++++e++s++gd++qRl  ++++AL+ar+++    ++k+ +    s++++++ l+a+k f++++P+l +++
  XP_009150381.1 163 MRNLLMQCAQAVASFDQSRAFEKLKEIREHSSSHGDATQRLGYHLANALEARITG----TMKTPAFDVLSRTSMVDILKAYKEFVQACPTLAMCY 253
                     579***************************************************9....77777777777788********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                      taN+ I e +++++++Hi+Df+i +G+QWp+L+qaL++Rp+gpp+lR+Tg++ p++g   +e++eetg+rL++f++++ vpfe+n+ +ak++++
  XP_009150381.1 254 YTANRSIFELASKATALHIVDFGILYGFQWPCLIQALSARPGGPPKLRVTGIELPQPGfrPSERVEETGRRLKRFCDKFSVPFEYNF-IAKAWDT 347
                     *********************************************************9*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++l+eL +++gE+++Vn++l+l++++de+vsl+s+rd+ Lkl+++++P+++v++e +  +ns+ Fl+rf ea+ ++s+lfd++e+++++e++ r+
  XP_009150381.1 348 ITLDELVINSGETTVVNCILRLQYTPDETVSLNSPRDTALKLFRDINPDLFVFAEINGTYNSPFFLTRFREAMFHCSSLFDMFESNISEENDCRT 442
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      vErel+ +++++v+acegaer++r et+++W+ r+ +aGF+p++l+++++k+ k l+r+ + + + ++++++++++gWk+r L+++S+W+
  XP_009150381.1 443 LVERELIIKDAMSVIACEGAERFARPETYKQWQVRILRAGFRPAKLNKQIMKEGKELVRERYHKDFVIDNDNHWMFQGWKGRVLYALSCWK 533
                     **************************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.755137513IPR005202Transcription factor GRAS
PfamPF035142.8E-118163533IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MLFCKYPLMG SDSTTVLDLA ANQGTILTPE PAASPVSKNL NLRTFLLRPN LSLALQAAER  60
SFFEVLQEDQ NPLQDDSSLE NLSPLTRRYH RLRDEEEEDD LEGGRKSKLP AISVVDELAE  120
KLEEVLLVCQ KKDHGEATPN QTGRAKGSLN RSKPQKSDQP VDMRNLLMQC AQAVASFDQS  180
RAFEKLKEIR EHSSSHGDAT QRLGYHLANA LEARITGTMK TPAFDVLSRT SMVDILKAYK  240
EFVQACPTLA MCYYTANRSI FELASKATAL HIVDFGILYG FQWPCLIQAL SARPGGPPKL  300
RVTGIELPQP GFRPSERVEE TGRRLKRFCD KFSVPFEYNF IAKAWDTITL DELVINSGET  360
TVVNCILRLQ YTPDETVSLN SPRDTALKLF RDINPDLFVF AEINGTYNSP FFLTRFREAM  420
FHCSSLFDMF ESNISEENDC RTLVERELII KDAMSVIACE GAERFARPET YKQWQVRILR  480
AGFRPAKLNK QIMKEGKELV RERYHKDFVI DNDNHWMFQG WKGRVLYALS CWKPAKKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-4316953424379Protein SCARECROW
5b3h_D2e-4316953424379Protein SCARECROW
5hyz_A1e-431675338375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.315240.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves, sepals, stamen and pistil, and in the quiescent center of root meristem. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009150381.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013711634.10.0scarecrow-like protein 30 isoform X4
SwissprotQ9SNB80.0SCL30_ARATH; Scarecrow-like protein 30
TrEMBLM4EYC10.0M4EYC1_BRARP; Uncharacterized protein
STRINGBra033813.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.30.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]