PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009150275.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 281aa MW: 31689.7 Da PI: 8.9874 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 130.5 | 1.3e-40 | 7 | 136 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 p+GfrF Pt+ el+++yL+ +++g + ++ + i+ +d+++veP +Lp+ + ++++++w fF++r++++a+g r++r+t+sgyWkatg+ +v XP_009150275.1 7 PVGFRFYPTEVELISFYLRIQLDGGHATIYSLIPILDVFNVEPTQLPNlageRWQGDREQWLFFVPRQEREARGGRPSRTTNSGYWKATGSPGPV 101 79***************************999**************9656766666888************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyr 127 +s +++++g+kkt+vfy g+apkg+kt+W m+ey+ XP_009150275.1 102 FSPDNRVIGVKKTMVFYMGKAPKGRKTKWKMNEYK 136 **********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 46.099 | 6 | 162 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.53E-44 | 6 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.9E-20 | 7 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MVEELPPVGF RFYPTEVELI SFYLRIQLDG GHATIYSLIP ILDVFNVEPT QLPNLAGERW 60 QGDREQWLFF VPRQEREARG GRPSRTTNSG YWKATGSPGP VFSPDNRVIG VKKTMVFYMG 120 KAPKGRKTKW KMNEYKAIDE TASVSTIPKL RHEFSVCRIY LKSGSSRAFD RRPTEGSGTE 180 TKLPSNGIET SSHNARPISI ETTQSNSEMI AGISKLLERK LPNNRAERSS CATISTSSET 240 SYSGGEDQVQ LPVNVTTTQR ISDMIDGLSQ PFWEWEQLNW S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-32 | 5 | 167 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-32 | 5 | 167 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-32 | 5 | 167 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-32 | 5 | 167 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-32 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 7e-32 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 7e-32 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 7e-32 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 7e-32 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 7e-32 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 7e-32 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 7e-32 | 5 | 167 | 20 | 173 | NAC domain-containing protein 19 |
4dul_A | 6e-32 | 5 | 167 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 6e-32 | 5 | 167 | 17 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009150275.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009150275.1 | 0.0 | PREDICTED: putative NAC domain-containing protein 61 | ||||
Refseq | XP_013652928.1 | 0.0 | putative NAC domain-containing protein 61 | ||||
Refseq | XP_013656720.1 | 0.0 | putative NAC domain-containing protein 61 | ||||
Swissprot | Q9M290 | 1e-123 | NAC61_ARATH; Putative NAC domain-containing protein 61 | ||||
TrEMBL | M4DSG6 | 0.0 | M4DSG6_BRARP; Uncharacterized protein | ||||
STRING | Bra019459.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 1e-133 | NAC domain containing protein 61 |