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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009150167.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
C2H2 |
Protein Properties |
Length: 450aa MW: 49972.9 Da PI: 9.626 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009150167.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 19.1 | 3.6e-06 | 68 | 90 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C+ C+k F+r nL+ H r H
XP_009150167.1 68 FICEVCNKGFKRDQNLQLHRRGH 90
89*******************88 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 450 aa
Download sequence Send
to blast |
MMIPDDHHHL SFPSYFLHQE QITPNLNPNP NPTSSNSNKR KRNLPGNPDP DAEVIALSPN 60 SLMATNRFIC EVCNKGFKRD QNLQLHRRGH NLPWKLKQRT NKEQVKKKVY ICPEKACVHH 120 DPARALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVMSDW KAHSKICGTR EYRCDCGTLF 180 SRKDSFITHR AFCDALAEES SRFASVPPAA TAAPYLNNAP DAEVNLGNVK LNHQQPGINI 240 NRHNTNGFMG QAFANQVSLP ANVFASSSLP SPHSASDSLQ NLWHLQGQSS HQWLLNENNN 300 RNILQRGISN NQEDQDTKKG IISSGYLFSS DSSTNYDQSG GQVIPSMSAT ALLQKAAQMG 360 SKRSESSSNN STAFGLMTSS IFNNKHTEND IKTKEVDERG FTRDFLGVGS QNRPWPLLMV 420 NHNLPNMTQP ATTDVKPTAG TATAGTPTAE
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, especially in vascular initials, cortex, endodermis, and quiescent center (QC). {ECO:0000269|PubMed:25829440}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF428302 | 0.0 | AF428302.1 Arabidopsis thaliana AT3g45260/F18N11_20 mRNA, complete cds. |
GenBank | AJ621493 | 0.0 | AJ621493.1 Arabidopsis thaliana mRNA for ID1-like zinc finger protein 1 (idz1 gene). |
GenBank | AY143936 | 0.0 | AY143936.1 Arabidopsis thaliana At3g45260/F18N11_20 mRNA, complete cds. |