PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009149710.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 300aa    MW: 34565.2 Da    PI: 8.0035
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009149710.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.6e-141462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++  G+g +W t ++++g++R++k+c++rw++yl
   XP_009149710.1 14 KGPWSPEEDAKLKSYIETRGTGgNWITLPHKIGLRRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding35.62.2e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++++E+ ++ ++    G++ W+ Ia+ ++ gRt++++k++w++
   XP_009149710.1  69 GGFSEDEESIICNLYLTIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.017962IPR017930Myb domain
SuperFamilySSF466896.27E-2511109IPR009057Homeodomain-like
SMARTSM007171.1E-91364IPR001005SANT/Myb domain
PfamPF002493.3E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-231569IPR009057Homeodomain-like
CDDcd001679.01E-71662No hitNo description
PROSITE profilePS5129419.38463117IPR017930Myb domain
SMARTSM007176.7E-1067115IPR001005SANT/Myb domain
PfamPF002495.5E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2270118IPR009057Homeodomain-like
CDDcd001671.78E-671113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE TRGTGGNWIT LPHKIGLRRC GKSCRLRWLN  60
YLRPNIKHGG FSEDEESIIC NLYLTIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLIMK  120
QRKDLQEACI EQQEMMVMMK RQQQQIQTSF MMRQDQTMFT WPPQQLPFLH HNDDQVPTLV  180
MNSSGGQEDS KPEIIKNMVK IEDQEPERTN AFDHLNISQL LLDPNNNYLG SGEGFSMNSI  240
LSTNTNSPLR NTSISHQRFR NFHDEAVDLF LGETSTSADQ STIRWEDISS LVYSDSKKCC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-23141177108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Accumulates in an adaxial ball-shaped set of cells in three to five cell layers around the L3 layer of the shoot apical meristem (SAM) in youg plantlets. In the inflorescence meristem, confined to the axils of flower primordia. {ECO:0000269|PubMed:16461581}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16461581}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00089SELEXTransfer from AT3G49690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009149710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195971e-161AY519597.1 Arabidopsis thaliana MYB transcription factor (At3g49690) mRNA, complete cds.
GenBankBT0292241e-161BT029224.1 Arabidopsis thaliana At3g49690 mRNA, complete cds.
GenBankY142091e-161Y14209.1 A.thaliana mRNA for AtMYB84 R2R3-MYB transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018515292.10.0PREDICTED: transcription factor RAX3
SwissprotQ9M2Y91e-161RAX3_ARATH; Transcription factor RAX3
TrEMBLM4DN760.0M4DN76_BRARP; Uncharacterized protein
STRINGBra017963.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29412568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-163myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]