PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009149642.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 250aa MW: 28650.6 Da PI: 6.5737 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47 | 4.7e-15 | 17 | 93 | 11 | 95 |
HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 + ++ +++p +f+++h + k+++k+ +l++ s ++W+v ++++ lt+GWk+F a++L+ gD+++Fk++g++ f +v+ XP_009149642.1 17 F-HNGVTIPLSFFSQHiQ-GKTNGKKWKLRSdASDQTWKVIQ--EGRR----LTEGWKDFTTAHDLRIGDILIFKHEGDMVF--HVT 93 3.5569**********64.4567889999987899*****99..8887....***********************9999888..665 PP | |||||||
2 | B3 | 63.7 | 3e-20 | 130 | 223 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++++++ ++ l+lp + ++ ++k+ k+++l +++g+sW+ l+y+ +++y+++kGWk+F+++n+ + gD +vF +++++++++++ v+ XP_009149642.1 130 AEVTASNIHEDKLYLPVEATTCTALNKQ-CKEIILVNKEGNSWTGSLRYSEADDMYYIRKGWKKFCEENNCNIGDLFVFNVVRDRNTTPLMCVCP 223 567888999999******9955588875.57***************************************************9999999999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.08E-20 | 3 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-20 | 3 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.702 | 6 | 98 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.70E-14 | 7 | 95 | No hit | No description |
SMART | SM01019 | 2.0E-18 | 9 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.9E-10 | 18 | 90 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.35E-17 | 126 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.30E-13 | 127 | 223 | No hit | No description |
PROSITE profile | PS50863 | 13.098 | 127 | 225 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.5E-18 | 127 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.4E-17 | 128 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.0E-19 | 130 | 223 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MGNPQEPHFL KPLLPGFHNG VTIPLSFFSQ HIQGKTNGKK WKLRSDASDQ TWKVIQEGRR 60 LTEGWKDFTT AHDLRIGDIL IFKHEGDMVF HVTPFGLSCC EIQFTHPHSI KEEADVDDTH 120 SFSFDYCFLA EVTASNIHED KLYLPVEATT CTALNKQCKE IILVNKEGNS WTGSLRYSEA 180 DDMYYIRKGW KKFCEENNCN IGDLFVFNVV RDRNTTPLMC VCPERKECAE LLIKHLSRMN 240 GDIASSSRVI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009149642.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189465 | 0.0 | AC189465.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB076B03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009149642.1 | 0.0 | PREDICTED: B3 domain-containing protein REM8-like | ||||
TrEMBL | M4EAQ8 | 0.0 | M4EAQ8_BRARP; Uncharacterized protein | ||||
STRING | Bra025867.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 5e-62 | B3 family protein |