PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009149544.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 817aa MW: 91316.7 Da PI: 5.7615

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009149544.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.2e-29	533	583	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ XP_009149544.1 533 DKTITLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 583 689**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.166	520	603	IPR003035	RWP-RK domain
Pfam	PF02042	1.8E-25	535	583	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.36E-22	710	805	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.9E-21	716	797	No hit	No description
PROSITE profile	PS51745	28.812	717	800	IPR000270	PB1 domain
SMART	SM00666	4.9E-26	717	800	IPR000270	PB1 domain
Pfam	PF00564	1.8E-18	718	799	IPR000270	PB1 domain
CDD	cd06407	1.89E-43	719	799	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 817 aa Download sequence Send to blast
MEDSFLQTQN AVMDTEFMDG LLLDGCWLET TDGSEFLNLP PSTPFDPSSF MWSPPTQDTS 60 AICTSGVVSQ TYGQDCADEF QWNKRWWIGP GGGGGSSVTE RLVQAVEHIK DYTTERGSLI 120 QLWVPVNRGG KRVLTTKEQP FSHDPMCQRL ANYREISVNY HFSAEQDDSK ALAGLPGRVF 180 LGKLPEWTPD VRFFKSEEYP RVQHAQDCDV RGTLAIPVFE QGSKICLGVI EVVMTTEMVK 240 LKPELESICR ALQAVDLRST ELPVPPSLKG CDLSYKAALP EIRNLLRCAC ETHKLPLAQT 300 WVSCLQQNKS GCRHNDENYI HCVSTIDDAC YLGDPTVREF QEACSEHHLL KGQGVAGQAF 360 LTNGPCFSPD VSNYKKSEYP LSHHANMFGL HGAVAIRLRC IHTGDADFVL EFFLPKDCDN 420 MEEQRRMLNA LSTIMAHVPR SLRTVTDKEL EEESEVVERE EVVTPKIENT SELHHSNPQN 480 LGLVFDGGDK LPSDGFGLKR GYDYTRESNI NESNTFTSGG FNSMAEKKRT KADKTITLDV 540 LRQYFAGSLK DAAKSIGVCP TTLKRICRQH GIQRWPSRKI KKVGHSLQKI QRVIDSVEGV 600 SGPLPIGSFY ANFPNLASQE PSQQPKTSPP PPPPPPLQLS KSPVSQYSHS SSSSQCCSSE 660 TQLNSSATAH PSQGDTFKKV SSEVDLQSSV LTLSSLENIP QGQGTHLLSS SSQDDDSLRI 720 KVSYGEENIR FRMKNSRRLS DLQWEIGKRF SIEDMSRYDL KYLDEDNEWV LLTCDEDVEE 780 CVDVCRTTPS HTIKLLLHAS SHHFPERSSP TGYTLWQ

Sequence ? help Back to Top

Protein Sequence Length: 817 aa Download sequence Send to blast

MEDSFLQTQN AVMDTEFMDG LLLDGCWLET TDGSEFLNLP PSTPFDPSSF MWSPPTQDTS  60
AICTSGVVSQ TYGQDCADEF QWNKRWWIGP GGGGGSSVTE RLVQAVEHIK DYTTERGSLI  120
QLWVPVNRGG KRVLTTKEQP FSHDPMCQRL ANYREISVNY HFSAEQDDSK ALAGLPGRVF  180
LGKLPEWTPD VRFFKSEEYP RVQHAQDCDV RGTLAIPVFE QGSKICLGVI EVVMTTEMVK  240
LKPELESICR ALQAVDLRST ELPVPPSLKG CDLSYKAALP EIRNLLRCAC ETHKLPLAQT  300
WVSCLQQNKS GCRHNDENYI HCVSTIDDAC YLGDPTVREF QEACSEHHLL KGQGVAGQAF  360
LTNGPCFSPD VSNYKKSEYP LSHHANMFGL HGAVAIRLRC IHTGDADFVL EFFLPKDCDN  420
MEEQRRMLNA LSTIMAHVPR SLRTVTDKEL EEESEVVERE EVVTPKIENT SELHHSNPQN  480
LGLVFDGGDK LPSDGFGLKR GYDYTRESNI NESNTFTSGG FNSMAEKKRT KADKTITLDV  540
LRQYFAGSLK DAAKSIGVCP TTLKRICRQH GIQRWPSRKI KKVGHSLQKI QRVIDSVEGV  600
SGPLPIGSFY ANFPNLASQE PSQQPKTSPP PPPPPPLQLS KSPVSQYSHS SSSSQCCSSE  660
TQLNSSATAH PSQGDTFKKV SSEVDLQSSV LTLSSLENIP QGQGTHLLSS SSQDDDSLRI  720
KVSYGEENIR FRMKNSRRLS DLQWEIGKRF SIEDMSRYDL KYLDEDNEWV LLTCDEDVEE  780
CVDVCRTTPS HTIKLLLHAS SHHFPERSSP TGYTLWQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.18166	0.0	root

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009149544.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189247	0.0	AC189247.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB018K09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009149543.1	0.0	PREDICTED: protein NLP4
Refseq	XP_009149544.1	0.0	PREDICTED: protein NLP4
Refseq	XP_018515432.1	0.0	PREDICTED: protein NLP4
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	M4EAM5	0.0	M4EAM5_BRARP; Uncharacterized protein
STRING	Bra025834.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein