PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009149477.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 409aa    MW: 44098.1 Da    PI: 5.883
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009149477.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.67.7e-07360382426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++C++f  +  C+ G++C F H+
  XP_009149477.1 360 KPCMYFNTSRGCRNGANCLFQHD 382
                     69********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.324356384IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-4360382IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4360383IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-6361389IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MRALHKSKRV SWPPDFKLCQ VRLFISEDSP SQVGSESQDH FQAKSSGASH LSDDNLPPGF  60
GGMLSPNESQ IKLSDIPVIK WNCSNRTLLD DEWRMVAGNE SKEAEAQNQR ELRVLEAFYP  120
GASSIPPNPS VPADVDTSDY DDQQTLVIPI LVVEDDDVAT DTASELPTQS GVDVPSITNE  180
TTSTSSSLPA ASEIMAALSA LSNSKEQGGS MIDKDLLIKI LSNPKMVENL VTNCGSSAGS  240
VSSNASHEAK GVVATATTPA CSNGQYNPQP AVAHIPPPMV YLPPARSNQS NYGAPPPPAK  300
DASYYKSLIQ QHGGERQEAP PPPVQHLGGY RYSQPGAGGG GPNPEIVSNR PRDSKPKIMK  360
PCMYFNTSRG CRNGANCLFQ HDATAAYQPR NINNNPEMQR AKRMRFDRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009149477.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149477.10.0PREDICTED: zinc finger CCCH domain-containing protein 6
SwissprotQ56XU40.0C3H6_ARATH; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A397Z1T40.0A0A397Z1T4_BRACM; Uncharacterized protein
STRINGBra025776.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56141418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02560.25e-06HB-other family protein
Publications ? help Back to Top
  1. Mastrangelo AM, et al.
    Low temperature promotes intron retention in two e-cor genes of durum wheat.
    Planta, 2005. 221(5): p. 705-15
    [PMID:15666155]