PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009149454.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 518aa MW: 58896.2 Da PI: 5.9719 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31 | 4.3e-10 | 366 | 403 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+++e+ LAk++gL+++qV +WF N R + XP_009149454.1 366 FEHflHPYPKESEKMMLAKQTGLSKNQVANWFINARVR 403 664459******************************88 PP | |||||||
2 | BELL | 113.4 | 1.2e-36 | 222 | 293 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kk+kLl++++eVdkrY+qy++q+++++ssFe+vag gsak+YtslAl++iS +Fr+L+dai+eqi XP_009149454.1 222 ERQELQNKKNKLLTMVDEVDKRYNQYYHQMEALASSFEIVAGFGSAKSYTSLALNKISCSFRSLRDAIKEQI 293 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.5E-47 | 156 | 291 | IPR006563 | POX domain |
Pfam | PF07526 | 1.6E-44 | 163 | 289 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.6 | 344 | 407 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.93E-11 | 347 | 408 | No hit | No description |
SMART | SM00389 | 2.0E-9 | 347 | 411 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.28E-17 | 348 | 412 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-27 | 350 | 411 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.8E-18 | 364 | 403 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 518 aa Download sequence Send to blast |
MAVYYSSNAN CYQQEPIYLD HQQQQQQASS SSAVAAASFV GENVRNEMVF IPPTTGLQTL 60 NGEVTRNGAV SGNDLSFYDG QGLSLSLGNQ ISLPSFHHQQ YHHLGFTPNP SISVKETSPF 120 DVEEKSKEMM LLLGQSNPSS GYAGLYSNYR FNETSGGFMS SFLRSRYLKP AQNLLDEVVS 180 VKKELNQMRK KKQKGEEDFN NGSKDTQGEL STDSNVKLST IERQELQNKK NKLLTMVDEV 240 DKRYNQYYHQ MEALASSFEI VAGFGSAKSY TSLALNKISC SFRSLRDAIK EQIQIIREKL 300 GEKGGGGESL DEQQGGGERI PRLRYLDQRL RQQRAFHQQL GMVRPSWRPQ RGLPENSVSV 360 LRAWLFEHFL HPYPKESEKM MLAKQTGLSK NQVANWFINA RVRLWKPMIE DIYKEEFGDE 420 SELQISKSSQ ELNSTNQDDS SSQQQQGDNN NNLGYPSADT TNINDKPQQE QEMNRSGDYE 480 TLMNYQGFGL EEEYRYMGGN NQEDSRFSNA HHLHDFVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 6e-16 | 353 | 410 | 5 | 62 | Homeobox protein Meis2 |
3k2a_B | 6e-16 | 353 | 410 | 5 | 62 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.19186 | 2e-47 | bud| flower |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009149454.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189558 | 0.0 | AC189558.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006P24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009149453.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 10 | ||||
Refseq | XP_009149454.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 10 | ||||
Refseq | XP_009149455.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 10 | ||||
Swissprot | Q9FXG8 | 0.0 | BLH10_ARATH; BEL1-like homeodomain protein 10 | ||||
TrEMBL | A0A3P5YEJ6 | 0.0 | A0A3P5YEJ6_BRACM; Uncharacterized protein | ||||
STRING | Bo5g027690.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19700.3 | 0.0 | BEL1-like homeodomain 10 |
Publications ? help Back to Top | |||
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