PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009149398.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 1049aa MW: 116148 Da PI: 6.6889 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.8 | 4.1e-23 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +++ XP_009149398.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFV--RDE 216 99*****************************954.4444.48************************************************..456 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ XP_009149398.1 217 KSQLTLGIRRA 227 77789999997 PP | |||||||
2 | Auxin_resp | 118.6 | 5.1e-39 | 252 | 334 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F++++nPras+seFvv+++k++kal+ +vs+GmRf+m+feted+ rr++Gtv+g+sdldpvrW++S+Wr+L+ XP_009149398.1 252 AAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLGMRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQ 334 799******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.79E-44 | 116 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-41 | 120 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.34E-21 | 125 | 226 | No hit | No description |
SMART | SM01019 | 4.3E-24 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-21 | 126 | 227 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.492 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.2E-34 | 252 | 334 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 9.2E-10 | 919 | 1007 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.365 | 921 | 1014 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 3.09E-8 | 935 | 999 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1049 aa Download sequence Send to blast |
MKAPSNGFHP NPAEGEKKAI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ 60 TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP VNKYDREALL ASDMGLKINR 120 QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH 180 IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFVRDEKSQL TLGIRRANRQ TPTLSSSVIS 240 SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF 300 ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP 360 FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGEE FGMKDAQSSM FPGLSLVQWM 420 SMQQNNPLSA GAAATTQLPS SYNLPNNFAP NDHSKLLNFQ SPNLSPANTQ FNKPNMVSHI 480 SQQMQAQPAM VQSQQQLQQQ VQMSHQQLQQ QHHQHQQQGG YNSGSVNNGV SVVSNQVSCQ 540 NQSAGFTQSQ LQQQSILSNG AKMTHQNIVS AGNKGSSQMT AQELQFQQQL ELHNSTQLLR 600 NQQEQSSMHS LQQNPQQLQM QQQQSSKPSP SQQLQMQLLQ KLQQQQQSTP PPGSSSLQPQ 660 LSSLQQTQSH QLQQLLSSQN QQPLPQSNNN GFMQPPQIQA SHHQQQGYMN NNKPIVRSQS 720 GHIDGEAPSC STSPSANNTG HDNVSPTNFL SRNQQQGQAV SVPASNPVQQ GMVNLKSAGE 780 QYKFKGAVTD QIDVTTAGTT YCPDVVVGPG QQQQQTFPLP SFGFDGDLQQ SQHPRNNLAF 840 AGNLEAVNPD ALYSQKDFQN LVVPNYGNAP RDIETELSSA SQSFGIPSIP FKSGGSNEIG 900 GINDSGIMNG GIWPNQAQRM RTYTKVQKRG SVGRSIDVTR YSGYEELRND LARMFGIEGQ 960 LEDPQISDWK LVYTDHENDI LLVGDDPWEE FVNCVQNIKI LSSAEVQQMS LDGDLAAIPT 1020 TNQACSETDS GNAWKVHYED TSAAASFNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-171 | 16 | 355 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16461383, ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009149398.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and ethylene. {ECO:0000269|PubMed:16461383}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979484 | 0.0 | JN979484.1 Brassica rapa subsp. pekinensis auxin response factor 19-2 (ARF19-2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009149398.1 | 0.0 | PREDICTED: auxin response factor 19 | ||||
Refseq | XP_013641917.1 | 0.0 | auxin response factor 19 | ||||
Swissprot | Q8RYC8 | 0.0 | ARFS_ARATH; Auxin response factor 19 | ||||
TrEMBL | A0A078GJI5 | 0.0 | A0A078GJI5_BRANA; Auxin response factor | ||||
TrEMBL | H9B4E5 | 0.0 | H9B4E5_BRARP; Auxin response factor | ||||
STRING | Bra025720.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2629 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |