PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009149397.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 155aa    MW: 17408.2 Da    PI: 4.371
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009149397.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.5e-191363155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s+ykGVr ++ +g+Wv+eIr p++   r r++lg+++t+e+Aa+a +aa  +l+g
  XP_009149397.1 13 SKYKGVRKRR-WGKWVSEIRLPNS---RERIWLGSYDTPEKAARAFDAALFCLRG 63
                    89*****887.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-121363IPR001471AP2/ERF domain
CDDcd000182.53E-281373No hitNo description
SuperFamilySSF541714.12E-211373IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-291472IPR001471AP2/ERF domain
SMARTSM003806.7E-311477IPR001471AP2/ERF domain
PROSITE profilePS5103221.9041471IPR001471AP2/ERF domain
PRINTSPR003679.4E-101526IPR001471AP2/ERF domain
PRINTSPR003679.4E-103753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MEGSSSSSSS MQSKYKGVRK RRWGKWVSEI RLPNSRERIW LGSYDTPEKA ARAFDAALFC  60
LRGSGANFNF PDNPPVIAGG QNMSRTEIRE AAARFANAEE NVEKEEEQEW ELVESVLPTV  120
GSGNFASDFG LFPGFDDDDE LSPTLYDCSV YLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-16171172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.302563e-90root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009149397.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149397.11e-111PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC26e-72ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLM4EAB11e-110M4EAB1_BRARP; Uncharacterized protein
STRINGBra025719.1-P1e-110(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-49ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]