PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009149364.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 354aa MW: 40555.9 Da PI: 6.1111

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009149364.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	70.8	1.2e-22	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++ nrqvt+skR+ gilKKA+ELS+LCd+++++++fs+tgk XP_009149364.1 9 KRLESTGNRQVTYSKRKCGILKKAKELSILCDIDILLLMFSPTGK 53 6889***************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.656	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.5E-29	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.76E-25	2	94	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.6E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.8E-19	12	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.6E-18	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.6E-18	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MGRVKLEIKR LESTGNRQVT YSKRKCGILK KAKELSILCD IDILLLMFSP TGKPTMLHGQ 60 HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKNLDHD INIPEFLGAR NQTIELMECH 120 RRLSCWTNID RIENTEHLTL LEESLRKSIE RIQFHKEHHG KNQLLPIECT TTQFHSGILP 180 LAMGDNNSMQ EAHSMSWLPD KDNQQTILPG DSSFIPHREM DGSIPVYTNC FFESVKQEDQ 240 KCINPGQQFE LLGQQGNGFL GLQQIGEEYS YPTPFGTTLG MEEDQENEIK TEMAFKNLQQ 300 QQDPSSMFDP TASSSSCFQI PLDQPMFATD LHHHHQNWVS GSMFGQTSYN QQPN

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MGRVKLEIKR LESTGNRQVT YSKRKCGILK KAKELSILCD IDILLLMFSP TGKPTMLHGQ  60
HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKNLDHD INIPEFLGAR NQTIELMECH  120
RRLSCWTNID RIENTEHLTL LEESLRKSIE RIQFHKEHHG KNQLLPIECT TTQFHSGILP  180
LAMGDNNSMQ EAHSMSWLPD KDNQQTILPG DSSFIPHREM DGSIPVYTNC FFESVKQEDQ  240
KCINPGQQFE LLGQQGNGFL GLQQIGEEYS YPTPFGTTLG MEEDQENEIK TEMAFKNLQQ  300
QQDPSSMFDP TASSSSCFQI PLDQPMFATD LHHHHQNWVS GSMFGQTSYN QQPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	4e-13	1	92	1	90	MEF2C
5f28_B	4e-13	1	92	1	90	MEF2C
5f28_C	4e-13	1	92	1	90	MEF2C
5f28_D	4e-13	1	92	1	90	MEF2C
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009149364.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB094116	0.0	AB094116.1 Arabidopsis thaliana At1g18750 mRNA for MADS-box protein, partial cds.
GenBank	AY143172	0.0	AY143172.1 Arabidopsis thaliana MADS-box protein AGL65 (AGL65) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009149364.1	0.0	PREDICTED: agamous-like MADS-box protein AGL65 isoform X2
Swissprot	Q7X9I0	0.0	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A078GNG1	0.0	A0A078GNG1_BRANA; BnaA06g12900D protein
STRING	Bra025685.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-178	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]