PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009149363.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 366aa MW: 41843.3 Da PI: 6.1111

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009149363.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	70.7	1.3e-22	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++ nrqvt+skR+ gilKKA+ELS+LCd+++++++fs+tgk XP_009149363.1 9 KRLESTGNRQVTYSKRKCGILKKAKELSILCDIDILLLMFSPTGK 53 6889***************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.656	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.5E-29	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.29E-25	2	94	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.3E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.0E-19	12	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.3E-18	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.3E-18	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MGRVKLEIKR LESTGNRQVT YSKRKCGILK KAKELSILCD IDILLLMFSP TGKPTMLHGQ 60 HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKNLDHD INIPEFLGAR NQTIESLSNQ 120 VAIFQAQLME CHRRLSCWTN IDRIENTEHL TLLEESLRKS IERIQFHKEH HGKNQLLPIE 180 CTTTQFHSGI LPLAMGDNNS MQEAHSMSWL PDKDNQQTIL PGDSSFIPHR EMDGSIPVYT 240 NCFFESVKQE DQKCINPGQQ FELLGQQGNG FLGLQQIGEE YSYPTPFGTT LGMEEDQENE 300 IKTEMAFKNL QQQQDPSSMF DPTASSSSCF QIPLDQPMFA TDLHHHHQNW VSGSMFGQTS 360 YNQQPN

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MGRVKLEIKR LESTGNRQVT YSKRKCGILK KAKELSILCD IDILLLMFSP TGKPTMLHGQ  60
HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKNLDHD INIPEFLGAR NQTIESLSNQ  120
VAIFQAQLME CHRRLSCWTN IDRIENTEHL TLLEESLRKS IERIQFHKEH HGKNQLLPIE  180
CTTTQFHSGI LPLAMGDNNS MQEAHSMSWL PDKDNQQTIL PGDSSFIPHR EMDGSIPVYT  240
NCFFESVKQE DQKCINPGQQ FELLGQQGNG FLGLQQIGEE YSYPTPFGTT LGMEEDQENE  300
IKTEMAFKNL QQQQDPSSMF DPTASSSSCF QIPLDQPMFA TDLHHHHQNW VSGSMFGQTS  360
YNQQPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	5e-13	1	92	1	90	MEF2C
5f28_B	5e-13	1	92	1	90	MEF2C
5f28_C	5e-13	1	92	1	90	MEF2C
5f28_D	5e-13	1	92	1	90	MEF2C
6byy_A	4e-13	1	92	1	90	MEF2 CHIMERA
6byy_B	4e-13	1	92	1	90	MEF2 CHIMERA
6byy_C	4e-13	1	92	1	90	MEF2 CHIMERA
6byy_D	4e-13	1	92	1	90	MEF2 CHIMERA
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009149363.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY143172	0.0	AY143172.1 Arabidopsis thaliana MADS-box protein AGL65 (AGL65) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009149363.1	0.0	PREDICTED: agamous-like MADS-box protein AGL65 isoform X1
Swissprot	Q7X9I0	0.0	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A078GNG1	0.0	A0A078GNG1_BRANA; BnaA06g12900D protein
STRING	Bra025685.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5933	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	0.0	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]