PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009149359.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB

Protein Properties

Length: 266aa MW: 30032.3 Da PI: 4.8576

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009149359.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.4	1.2e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT eEd++lv +++++G g+W+ +r+ g+ R++k+c++rw++yl XP_009149359.1 14 RGGWTDEEDQKLVAYINEYGIGDWRFLPRKAGLQRCGKSCRLRWLNYL 61 789*******************************************97 PP
2	Myb_DNA-binding	54.4	3e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g++T+eE+e +++ lG++ W++Ia+ m+ gR+++++k++w++ XP_009149359.1 67 KGKFTPEEEEAIINFQSVLGNR-WAAIAQQMP-GRSDNDIKNHWNSC 111 79******************.*****.*********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.546	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	7.7E-30	12	108	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-13	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-23	16	68	IPR009057	Homeodomain-like
CDD	cd00167	7.73E-11	17	61	No hit	No description
PROSITE profile	PS51294	25.756	62	116	IPR017930	Myb domain
SMART	SM00717	2.2E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-15	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	9.11E-11	69	109	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.9E-25	69	116	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MGRATWFDAD GTKRGGWTDE EDQKLVAYIN EYGIGDWRFL PRKAGLQRCG KSCRLRWLNY 60 LRPGVKKGKF TPEEEEAIIN FQSVLGNRWA AIAQQMPGRS DNDIKNHWNS CLKKRLERNG 120 IDQMTHQPII NLAVKTPSFN IDCGNSSSSM VSPSPSFSSS GSASLLNRLA TGISSREHGV 180 DRIKNILSDP RTPIITTQEE EFEEPNKDHG KALAGDDQED DFLMWDEENM RHFMDEIGQM 240 DFETNGVYNP SSSSPYGVYE TGLLDD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-29	14	117	7	109	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009149359.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009149359.1	0.0	PREDICTED: transcription repressor MYB6-like
Refseq	XP_013641843.1	0.0	transcription factor MYB41-like
TrEMBL	A0A078GJM0	0.0	A0A078GJM0_BRANA; BnaA06g12870D protein
TrEMBL	A0A3P5YS96	0.0	A0A3P5YS96_BRACM; Uncharacterized protein
STRING	Bo5g025790.1	1e-176	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18710.1	1e-87	myb domain protein 47