PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009149330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 341aa MW: 38407.2 Da PI: 6.2672 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.5e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ + + +G g W+t +++ g++R++k+c++rw +yl XP_009149330.1 15 KGAWTPEEDQKLISYLNNHGEGGWRTLPEKAGLKRCGKSCRLRWANYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +T++E++ ++ +++++G++ W+ Iar ++ gRt++++k++w+++ XP_009149330.1 68 RGEFTEDEELSIISLHALHGNK-WSDIARGLP-GRTDNEIKNYWNTH 112 899*******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.817 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-28 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-12 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-15 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-23 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.11E-9 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.368 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-15 | 68 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-25 | 70 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.35E-11 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MVRTPCCKPE LGLKKGAWTP EEDQKLISYL NNHGEGGWRT LPEKAGLKRC GKSCRLRWAN 60 YLRPDIKRGE FTEDEELSII SLHALHGNKW SDIARGLPGR TDNEIKNYWN THIKKRLIKK 120 GVDPVTHKSL ISETSKSENL PEILNNQNII QTIITSKDDL GNNENVKNEA NKSRLSSARF 180 LNRVANRFGK KINQRVISEI IGSGGPLITT TTTTSVTVDS ISDKSTSFSF TPTSYLLNQM 240 TVNGNGNATS PPSMFSDSSV NDPLMCRSVD NIGFSGFLNE QHAMMLEESC VENTEFMNEL 300 TRFLREDVNN DVEVTPVYEY KDDFEEIDNY FACVNLLTNP T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-27 | 13 | 117 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.31779 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in vegetative parts of the plant, mainly in mature rosette leaves and in trichomes. Detected in roots, but not in mature flowers or siliques. {ECO:0000269|PubMed:17461791, ECO:0000269|PubMed:23115560}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor positively regulating indolic glucosinolate biosynthetic pathway genes. {ECO:0000269|PubMed:17461791, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009149330.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by touch or wounding. {ECO:0000269|PubMed:17461791, ECO:0000269|PubMed:23115560}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ584298 | 0.0 | FJ584298.1 Brassica rapa subsp. pekinensis MYB domain protein 51-3 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009149330.1 | 0.0 | PREDICTED: transcription factor MYB51 | ||||
Swissprot | O49782 | 1e-148 | MYB51_ARATH; Transcription factor MYB51 | ||||
TrEMBL | M4EA59 | 0.0 | M4EA59_BRARP; Uncharacterized protein | ||||
STRING | Bra025666.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18570.1 | 1e-145 | myb domain protein 51 |