PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009149100.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 134aa    MW: 15486.4 Da    PI: 4.3139
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009149100.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.98e-181099198
                    EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                    f+k ++++   + + l +p  f  e+     + + t+ l d  grsW++++  +k++++++lt GW++Fvk+n+L++g ++ F +d +++f  +v +
  XP_009149100.1 10 FIKPFISHK--SAKSLAIPLAFN-EYfPD--PLPNTVELLDYYGRSWTIRM--KKRGETVFLTVGWENFVKDNELEDGKMMEFIYDCDRTF--YVVI 97
                    667774444..44459******8.66243..4889****************..*******************************9987777..8888 PP

                    E- CS
              B3 97 fr 98
                    f 
  XP_009149100.1 98 FG 99
                    76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-205100IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.7898101IPR003340B3 DNA binding domain
SuperFamilySSF1019361.61E-219101IPR015300DNA-binding pseudobarrel domain
PfamPF023626.9E-161099IPR003340B3 DNA binding domain
SMARTSM010192.2E-1710101IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MAAPDEDQRF IKPFISHKSA KSLAIPLAFN EYFPDPLPNT VELLDYYGRS WTIRMKKRGE  60
TVFLTVGWEN FVKDNELEDG KMMEFIYDCD RTFYVVIFGH GGVSELRVFP QAVVDVGDYA  120
TGEEEEEEEK NKSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A4e-5011003101At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009149100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149100.11e-96PREDICTED: B3 domain-containing protein At1g16640
SwissprotQ9FX773e-55Y1664_ARATH; B3 domain-containing protein At1g16640
TrEMBLA0A397YYT13e-95A0A397YYT1_BRACM; Uncharacterized protein
STRINGBo5g022070.19e-87(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157511416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.12e-57B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]