PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009148819.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ZF-HD
Protein Properties Length: 310aa    MW: 34918 Da    PI: 7.488
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009148819.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.93.7e-3190146360
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                      ++YkeClkNhAa++Gg+a+DGCgEfmps ge+g+++al+C+ C+CHRnFHR+eve e
  XP_009148819.1  90 MIKYKECLKNHAAAMGGNATDGCGEFMPS-GEDGSIEALTCSVCNCHRNFHRKEVEGE 146
                     689*************************9.999*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.9E-2891143IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2991153IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-3092143IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.92693142IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.12E-18210275IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-29212276IPR009057Homeodomain-like
TIGRFAMsTIGR015654.7E-27217273IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDIASQDDHD MPIPLSTTFV GSGGGHGHMI HHHHDHHASD SAPPTHNHNN ITTTQPPQMQ  60
LHGNGHGNSN DHHHQDPHHI GYNAIIKKPM IKYKECLKNH AAAMGGNATD GCGEFMPSGE  120
DGSIEALTCS VCNCHRNFHR KEVEGETTAT AISSHHQPPP PRKLMVNHHN IRSAMPHQMI  180
MPIGVSNYRY MHNLESGDFM EQDGVTTASR PPAYNQKKRF RTKFTPEQKE KMLSFAEKVG  240
WKIQRQEDCV VQRFCEEIGV KRRVLKVWMH NNKLHFSNKN TSNNINLEGN DNDKINNVNN  300
VDVSGNNDMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-242182731873ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Not detected in the meristem prior to exposure to long days (LDs), but after exposure to three LDs, stable accumulation on the flanks of the meristem adjacent to floral primordia, during floral induction. {ECO:0000269|PubMed:22319055}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009148819.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934560.0AB493456.1 Arabidopsis thaliana At1g14440 mRNA for hypothetical protein, partial cds, clone: RAAt1g14440.
GenBankAY0742660.0AY074266.1 Arabidopsis thaliana unknown protein (At1g14440) mRNA, complete cds.
GenBankAY0967380.0AY096738.1 Arabidopsis thaliana unknown protein (At1g14440) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF14L170.0AC012188.2 Sequence of BAC F14L17 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009148819.10.0PREDICTED: zinc-finger homeodomain protein 4
SwissprotQ9M9S01e-172ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A397Z0F30.0A0A397Z0F3_BRACM; Uncharacterized protein
TrEMBLM4EBR00.0M4EBR0_BRARP; Uncharacterized protein
STRINGBra026219.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33392665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.21e-138homeobox protein 31