PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009148404.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 401aa    MW: 46403.2 Da    PI: 6.0479
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009148404.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-12215257754
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       Er+RR+riN+++  Lr ++P+      +K++K  +L  Av+YI++L
  XP_009148404.1 215 HSERKRRERINQRIYALRAVVPNV-----TKMNKNGTLSDAVDYINQL 257
                     57*********************8.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.0E-1511154IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.44E-15206271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.79E-12206262No hitNo description
PROSITE profilePS5088815.574208257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-13214263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-14215271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-10215257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MMMRGGERVK EFLRPFVDSR EWDFCVIWKL GDDPSRFIEW VGCCCSGSYI DKNIKHEHVE  60
EEETQKMSSI CRDEDNKHHI RTLACEALSR FPLFMPLYPG IHGEVVMSKS PKWLVNSGPG  120
SKQDIFSTRV LVPVRDGLVE LFSFIMKPVD ESLVDLIISH CNTFFEPYPE QTLPFRIISK  180
EEESMLMHKE EDVVMQNTMD DKKVAKENFK SKNLHSERKR RERINQRIYA LRAVVPNVTK  240
MNKNGTLSDA VDYINQLLVE KQKLEDELRG FNEIESRRIA AEEESAIANP HTEKVASRLN  300
KIVNNEVSLE VYETGERGFL IRVAQEHNKQ DGFKRLIEAV DSCGLEIIDV NFTRLDLRVM  360
TVLNVKASKD GTTPENLRDL LLKMMMRTSE NPNVESLRQC T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216221ERKRRE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009148404.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009148404.10.0PREDICTED: transcription factor bHLH90 isoform X2
SwissprotQ0WNR20.0BH090_ARATH; Transcription factor bHLH90
TrEMBLM4DTS10.0M4DTS1_BRARP; Uncharacterized protein
STRINGBra019914.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.10.0bHLH family protein