PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009148338.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-X1
Protein Properties Length: 1117aa    MW: 121725 Da    PI: 8.1286
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009148338.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X123.89.8e-08320338119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H+C+k+CH GpC+pC+
  XP_009148338.1 320 CGRHQCEKTCHVGPCDPCQ 338
                     ******************6 PP
2zf-NF-X118.16e-06384401118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG+H C++ CH+GpC+ C
  XP_009148338.1 384 CGNHFCSEVCHPGPCGDC 401
                     ****************99 PP
3zf-NF-X125.62.6e-08443460118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG H+C++ CH G+CppC
  XP_009148338.1 443 CGLHTCNEVCHSGDCPPC 460
                     ****************** PP
4zf-NF-X118.64.1e-06541559119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H+C++lCH G CppC 
  XP_009148338.1 541 CGQHSCESLCHSGHCPPCL 559
                     ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578509.0E-6140211No hitNo description
PROSITE profilePS500168.858149210IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.509152208IPR001841Zinc finger, RING-type
PROSITE patternPS013590152207IPR019786Zinc finger, PHD-type, conserved site
CDDcd060086.17E-6241303No hitNo description
SMARTSM004380.21265283IPR000967Zinc finger, NF-X1-type
PfamPF014228.1267282IPR000967Zinc finger, NF-X1-type
CDDcd060081.16E-12310358No hitNo description
SMARTSM004386.4E-5320339IPR000967Zinc finger, NF-X1-type
PfamPF014229.2E-6320337IPR000967Zinc finger, NF-X1-type
CDDcd060083.76E-9374419No hitNo description
SMARTSM004382.6E-5384403IPR000967Zinc finger, NF-X1-type
PfamPF014227.2E-5384401IPR000967Zinc finger, NF-X1-type
CDDcd060081.04E-14433480No hitNo description
SMARTSM004382.9E-6443462IPR000967Zinc finger, NF-X1-type
PfamPF014225.2E-7443460IPR000967Zinc finger, NF-X1-type
SMARTSM0043876502533IPR000967Zinc finger, NF-X1-type
PfamPF0142218502513IPR000967Zinc finger, NF-X1-type
CDDcd060085.87E-10531583No hitNo description
SMARTSM004382.0E-4541560IPR000967Zinc finger, NF-X1-type
PfamPF014221.0E-4541558IPR000967Zinc finger, NF-X1-type
CDDcd060081.26E-6588635No hitNo description
SMARTSM004380.079598616IPR000967Zinc finger, NF-X1-type
PfamPF0142223598615IPR000967Zinc finger, NF-X1-type
SMARTSM004380.018651681IPR000967Zinc finger, NF-X1-type
PfamPF014220.0049651666IPR000967Zinc finger, NF-X1-type
CDDcd060088.36E-5679728No hitNo description
SMARTSM004380.014690711IPR000967Zinc finger, NF-X1-type
PfamPF014220.43691709IPR000967Zinc finger, NF-X1-type
PfamPF014241.4E-4823887IPR001374R3H domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1117 aa     Download sequence    Send to blast
MSSQVRRDRR HQSSQQTWVP RGASTSVAVV NEPSHPPANN TAGVSESLVA GAASRPVYPQ  60
RQHNGSVRPP YNQHQRNNNV AAPPPHNRQR RNNNAPGATL PDDNRQRVGS RTRPVYQGKR  120
VAKEDNIALT NPNLPQLVQE IQEKLVKSSI ECMICYDKVG RAANIWSCSS CYSIFHMHCI  180
KKWARAPTSI DLLAEKNQGD NWRCPGCQSV QLTSSREICY RCFCGKRKDP PADPYLTPHS  240
CGEPCGKPLE KELFAGAETT SEDLCPHICV LQCHPGPCPP CKAFAPPRSC PCGKKTIHTR  300
CSERRSLLVC GQRCEKLLNC GRHQCEKTCH VGPCDPCQVL VNATCFCKKK VETVICGDMN  360
VKGELKAESG VYSCNLNCGK PLGCGNHFCS EVCHPGPCGD CDLLPGRVKT CYCGKTRLEE  420
QTRQSCLDPI PFCSNICSKL LPCGLHTCNE VCHSGDCPPC LVQVNQKCRC GSTSRTVECY  480
ITTSSETDKF VCSKPCGRKK NCGRHRCSER CCPLLNAKKN DLSGNWDEHV CQLPCGKKLR  540
CGQHSCESLC HSGHCPPCLE MIFTDLTCAC GNTSIPPPLP CGTPVPSCQL PCSIPQPCGH  600
SATHGCHFGD CPPCSAPVEK KCVGGHVVLR NIPCGLKDIR CNKICGKTRR CGMHACARTC  660
HPEACDTYSE SEAGLRVTCG QTCSAPRRDC RHTCAALCHP SQPCPDSRCE FPVTITCSCG  720
RITATVPCDA GGGSTSNLSV DSIYEASVLQ KLPTTLQPAE SSGNRIPLGQ RKLSCDDECA  780
KQERKRVLQD AFDITPPNLD SLHFSENAAM TEIISDIYRR DPKWVLAVEE RFKFLVLGKA  840
RGSTSALKVH VFCPMQKDKR DTVRLLAERW KLAVSNAGWE PKRFTVVHVT QKSKTPTRII  900
GARGGAISLG GPHPPSFDPL VDMDPRLVVS LLDLPREANI SALVLRFGGE CELVWLNDKN  960
ALAVFHDHAR AATAMRRLDH GSVYHGAVVV QNGPQSPSLG GNAWGKLPSS SSWDVQKANP  1020
WKKAVIQESD ENWGADDSPI GGSSTDIQAA AWRSATSNTP VVTSVNRWSV LEPEKPNTSA  1080
LQPLVQTEGS SSSKAAGKQP VEGSSEEVVD DWEKVCE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009148338.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895190.0AC189519.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091G04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009148338.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLM4DTW50.0M4DTW5_BRARP; Uncharacterized protein
STRINGBra019958.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1