PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009148277.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 844aa MW: 95724.4 Da PI: 6.2924 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.3 | 8.2e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l XP_009148277.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 34.4 | 5.1e-11 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k+l++ W+tIa +g Rt+ qc +r+ k+l XP_009148277.1 60 TEWTREEDEKLLHLAKLLPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.79E-11 | 10 | 53 | No hit | No description |
Pfam | PF13921 | 4.2E-13 | 10 | 70 | No hit | No description |
SuperFamily | SSF46689 | 8.27E-21 | 33 | 109 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 5.31E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.675 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 3.1E-56 | 407 | 654 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 844 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE KLLDAACTKD ENYEAADDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIGNSHR KRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT 240 TIEDLEGKRR ADVEAQLRKQ DVARNKIAER RDAPAAILQA NKMNDPEAVR KRSKLMLPPP 300 QISDHELEEI AKMGYASDLL AENEELMEGS AATRALLANY SQTPRQGMTP LRTPQRTPAG 360 KGDAIMMEAE NLARLRDSQT PLLGGDNPEL HPSDFTGVTP RKKEIQTPNP MLTPSMTPGG 420 ASLTPRIGLT PSREGSSFAM TPRGTPFRDE LHINEDMDMH ENAKLERQRR EEARMSLRSG 480 LTGLPQPRNE YQIVAQPPPE ESEEPEEKIE EDMSDRIARE KAEEEARQQA LLRKRSKVLQ 540 RDLPRPPAAS LELIRNSLLS ANRDKSSVVP PSPVDDADEM VRKELLQLLE HDNAKYPLDE 600 KAEKKKGGKN RANSSGSQVT AIEDFEENEL QEADKMIKEE AQFLCAAMGN ESKTFDEFVV 660 AHDDCVKDIM YFPTRNAYGP SSVAVKAEKV AALQVEMENA RKKMEEDEKK AEHMKAKYKT 720 YTKGHEKRAE TVWSQIEASL KQIEIGGTEV ECFKALKRQE EMAASFRKKN LEEEVVKQKE 780 TERRLQARYG ELLSTLEKAE ELMVGFRAQA LKQTDVVEDS LNQKEAKLAT GEEEDVAISM 840 EASA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 793 | 3 | 792 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 793 | 3 | 792 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 793 | 3 | 792 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 793 | 3 | 792 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 793 | 3 | 792 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 793 | 3 | 792 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 793 | 3 | 792 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 793 | 3 | 792 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 793 | 3 | 792 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 793 | 3 | 792 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 793 | 3 | 792 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 793 | 3 | 792 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGIGNSHRKRKRK |
2 | 199 | 204 | RKRKRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009148277.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009148277.1 | 0.0 | PREDICTED: cell division cycle 5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | M4DU00 | 0.0 | M4DU00_BRARP; Uncharacterized protein | ||||
STRING | Bra019993.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6453 | 27 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Publications ? help Back to Top | |||
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