PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009148090.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 479aa    MW: 53430.2 Da    PI: 7.4782
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009148090.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.53.7e-10175216445
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                      k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  XP_009148090.1 175 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQEL 216
                     5889*************************8766666655544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-7172249IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.289174218IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.0E-8175219No hitNo description
PfamPF001702.2E-7175216IPR004827Basic-leucine zipper domain
CDDcd147081.39E-22176228No hitNo description
SuperFamilySSF579596.25E-7176218No hitNo description
PROSITE patternPS000360179194IPR004827Basic-leucine zipper domain
PfamPF141441.3E-28257332IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MATNHNHSHH LSYSLLHGLS NNPPPPGFIN QDGSSSFDFG ELEEAIVLQG VKYRNDETKP  60
PLFAGGGGGA TTLEMFPSWP IRTHQTLPTE ESSKSEGEST DSGSANFSSK AESQQPESPM  120
SNKQNHQLML QHQRNNNMAN SASTSGLPST SRTPGPPKST EDKRKATTSG KLLDAKTLRR  180
LAQNREAARK SRLRKKAYVQ QLESSRIKLS QLEQELQRAR SQGMFMGGCG PPGPNITSGA  240
AMFDMEYERW LEEDNRHMSE IRTGLQAHLS DNDLRLIVDG YIAHFDEVLR LKAVAAKADV  300
FHLIIGTWMS PAERCFIWMA GFRPSDLIKI LVSQMDLLTE QQLMGIYSLQ HSSQQAEEAL  360
SQGLEQLQQS LIDTLAASPV MDGMQQMAVA LGKISNLEGF IRQADNLRQQ TVHQLRRILT  420
VRQAARCFLV IGEYYGRLRA LSSLWLSRPR ETLISDETSC QTTTDLQMVQ SSRNHFSNF
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269|PubMed:20805327}.
UniprotTISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269|PubMed:20805327}.
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009148090.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3147570.0AJ314757.1 Arabidopsis thaliana mRNA for bZIP transcription factor (AtbZIP21 gene).
GenBankHQ1327430.0HQ132743.1 Arabidopsis thaliana bZIP21 (At1g08320) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009148090.10.0PREDICTED: transcription factor TGA2.2 isoform X1
RefseqXP_013641093.10.0transcription factor TGA9-like isoform X1
RefseqXP_018514993.10.0PREDICTED: transcription factor TGA2.2 isoform X1
SwissprotQ93XM60.0TGA9_ARATH; Transcription factor TGA9
TrEMBLA0A3P5YNN50.0A0A3P5YNN5_BRACM; Uncharacterized protein
STRINGBra018634.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55242441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.30.0bZIP family protein
Publications ? help Back to Top
  1. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  2. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]