PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009147930.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 306aa    MW: 34701.8 Da    PI: 7.9605
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009147930.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.57e-1334681649
                    HHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEE CS
          SRF-TF 16 RrngilKKAeELSvLCdaevaviifsstgkl.yey 49
                    R ++ilKKA ELS+LCd +++vi +  +g+l  +y
  XP_009147930.1 34 REKTILKKALELSILCDNDICVIHYDREGNLvNTY 68
                    99***********************9999872456 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0034570IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-1221105IPR002100Transcription factor, MADS-box
PfamPF003192.3E-73464IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.4613471IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDSLSSSTST KMKNNNKLSV RNQTRFKKPF LLLREKTILK KALELSILCD NDICVIHYDR  60
EGNLVNTYPE DQCQVKHIVE RYRNLRDGEK IKKNTNLSQF YNKKLVDEKR RSLTDAEERK  120
RFTKKVGEFK SSLEHKLQIV KDRVRDLLYS QDHQTEPDQS TCLDVMSQQN HNFPTSSSGF  180
FPQNDLSSSL IDEEDPLMNF CPQVINNPVS VHQQQIGSSL TNLLMSGDAS GSSNDRSKFS  240
MFLFNHETAT FTPLPNSVSS SFDQGLTPCS NNLITASHGA QGFNFGCSNN LNTQGFNFGC  300
NNNLCT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009147930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009147930.20.0PREDICTED: agamous-like MADS-box protein AGL93
TrEMBLM4DQH40.0M4DQH4_BRARP; Uncharacterized protein
STRINGBra018767.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11759729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26950.12e-34AGAMOUS-like 93