PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009147833.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 310aa    MW: 36032.8 Da    PI: 8.276
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009147833.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.36.8e-122067154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                    ++ykGV ++  +g W A+I++      +kr++lg+f +a eAa  ++ a  kl+
  XP_009147833.1 20 TKYKGVVQHQ-NGHWGAQIYVD-----HKRIWLGTFKSAAEAAMSYDSASIKLR 67
                    69*****999.8*********3.....4*********************99998 PP
2B384.21.2e-26142233184
                     EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                     f+k+lt sdv+k++rlv+pkk+a ++        +g+  e+++++++d++ r W+++++y+ +s+++v+t+GW +Fvk+++Lke+D ++F+ 
  XP_009147833.1 142 FQKELTASDVGKLNRLVIPKKYAVKYlpfisereEGEIVEDVEVVFYDREMRPWKFRYCYWTSSQSFVFTRGWIGFVKEKRLKEKDLITFYT 233
                     99****************************99985566799*************************************************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.10E-232080No hitNo description
Gene3DG3DSA:3.30.730.101.2E-152178IPR001471AP2/ERF domain
PROSITE profilePS5103217.1082178IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-142179IPR016177DNA-binding domain
SMARTSM003801.6E-172184IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.7E-31137249IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-26140234IPR015300DNA-binding pseudobarrel domain
CDDcd100172.73E-25141232No hitNo description
SMARTSM010199.3E-18142252IPR003340B3 DNA binding domain
PfamPF023624.8E-24142233IPR003340B3 DNA binding domain
PROSITE profilePS5086312.196142253IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MRLNEPPTTD KALVSASDKT KYKGVVQHQN GHWGAQIYVD HKRIWLGTFK SAAEAAMSYD  60
SASIKLRAFD ANSQRNFPWS DLTVHEPVFQ KGYTTEAVLN MIKDGSYQRE FKEFLKNRSQ  120
IASKQNRRDE ESNKCFSCTQ LFQKELTASD VGKLNRLVIP KKYAVKYLPF ISEREEGEIV  180
EDVEVVFYDR EMRPWKFRYC YWTSSQSFVF TRGWIGFVKE KRLKEKDLIT FYTCDVPTLE  240
GQSKKFLMID VRYFSDNNSA VTDEEVNKTV HNNSFDDVMK PEINSKLGGE EEAKPEENKG  300
GFMLFGVRIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2314123113100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009147833.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893010.0AC189301.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB030D08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009147833.20.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6P51e-152RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLM4DQR10.0M4DQR1_BRARP; Uncharacterized protein
STRINGBra018854.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-145RAV family protein