PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009147819.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 203aa    MW: 22265.8 Da    PI: 9.7294
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009147819.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42.1e-192171155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++++GVr ++ +gr++AeIrdp++   + r++lg+f++a +Aa+a++aa+++l+g
  XP_009147819.1 21 TRFRGVRKRP-WGRYAAEIRDPYK---KSRVWLGTFDSAVDAARAYDAAARNLRG 71
                    589*******.**********765...6*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-112171IPR001471AP2/ERF domain
CDDcd000181.43E-172180No hitNo description
Gene3DG3DSA:3.30.730.107.7E-312279IPR001471AP2/ERF domain
PROSITE profilePS5103222.552279IPR001471AP2/ERF domain
SMARTSM003801.2E-372285IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-212280IPR016177DNA-binding domain
PRINTSPR003672.2E-92334IPR001471AP2/ERF domain
PRINTSPR003672.2E-94561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MRRGRVSTPV AANHNASIKE TRFRGVRKRP WGRYAAEIRD PYKKSRVWLG TFDSAVDAAR  60
AYDAAARNLR GPKAKTNFPI ESPPSPPRID PFMDHRLYAG ASSRPTSSSM SSTVESSSGQ  120
RSSAAKPLST TAKRYPRTPP VVPEDCHSDC GSSSSVIDDG DDDIASSSRR REPPPFKFDL  180
NFPPLDDVGL IDGVDDICTD LRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-201081874Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009147819.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009147819.11e-145PREDICTED: ethylene-responsive transcription factor 3
SwissprotO803393e-67ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLM4DQS11e-143M4DQS1_BRARP; Uncharacterized protein
STRINGBra018864.1-P1e-144(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.12e-44ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]