PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009147812.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 338aa    MW: 38711.8 Da    PI: 8.3283
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009147812.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.63.6e-094591254
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                    +ykGV + + +g W A+I+       +kr++lg+f +a  Aa+a++ a  k++
  XP_009147812.1 45 KYKGVVQLP-NGHWGAQIYTD-----HKRIWLGTFRSAAVAAAAYDSASIKIR 91
                    8********.8******9883.....4*******************9988876 PP
2B387.31.3e-27171266184
                     EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f k+ltpsdv+k++rlv+pkk+a ++            +g+  e+++++++d+  r+W+++++y+++s+++v+t+GW++Fvk++ Lke+D +vF+
  XP_009147812.1 171 FRKELTPSDVGKLNRLVIPKKYAVRYlpllrddqkereEGEIVEDVEVVFYDRGMRQWKFRYCYWRSSQSFVFTSGWNGFVKEKSLKEKDAIVFY 265
                     89*****************************98776664444599*************************************************9 PP

                     E CS
              B3  84 l 84 
                      
  XP_009147812.1 266 T 266
                     3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.71345102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-1545102IPR001471AP2/ERF domain
SMARTSM003801.0E-1445108IPR001471AP2/ERF domain
PfamPF008474.1E-54591IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-1345103IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.109.8E-32162287IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-27169267IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-24170265No hitNo description
PROSITE profilePS5086312.464171288IPR003340B3 DNA binding domain
PfamPF023628.5E-25171266IPR003340B3 DNA binding domain
SMARTSM010191.0E-18171278IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MNTEDAKTES PTVSSGCFLP LKKRMKLHNN PPNNALEVVV SGSAKYKGVV QLPNGHWGAQ  60
IYTDHKRIWL GTFRSAAVAA AAYDSASIKI RSYDANMHRN FPWSEYTVHE PAFQNEHTTE  120
AVLSMIKDGT YQRKYREFLK KVQSKIVGGY NMVGSKQDQE SKKGFSCTEL FRKELTPSDV  180
GKLNRLVIPK KYAVRYLPLL RDDQKEREEG EIVEDVEVVF YDRGMRQWKF RYCYWRSSQS  240
FVFTSGWNGF VKEKSLKEKD AIVFYTCDVP TLEGQRKKFL MIDVHCSSDE GSAVCDEEVN  300
ETGGVKTENF SNSKLEEEEE TKSVENKGGF MLFGVRIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-23169267696B3 domain-containing transcription factor NGA1
5os9_B8e-23169267696B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009147812.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009147812.20.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-155RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLM4DQS50.0M4DQS5_BRARP; Uncharacterized protein
STRINGBra018868.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-129RAV family protein