PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009147811.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 313aa    MW: 36375.2 Da    PI: 8.9752
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009147811.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.62.1e-102773254
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                    +ykGV + + + rW A+I++      +kr++lg+f +a +Aa a + a  kl+
  XP_009147811.1 27 KYKGVVQQP-NSRWGAQIYVD-----HKRIWLGTFSSAVKAAMAFDSASIKLR 73
                    8********.8*********3.....4*******************9999987 PP
2B381.48.9e-26150241184
                     EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                     f+k+lt sdv++++rlv+pkk+a ++        +g+   +++++++d++ r W+++++y+ +s+++v+t+GW +Fv++++Lke+D+++F+ 
  XP_009147811.1 150 FQKELTASDVGRLNRLVIPKKYAVKYlpfisereEGEIIDDVEVVFYDREMRPWKFRYCYWTSSQSFVFTRGWIGFVREKRLKEKDVITFYT 241
                     99***************************9887744445899************************************************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.4E-152784IPR001471AP2/ERF domain
PROSITE profilePS5103216.3842784IPR001471AP2/ERF domain
SMARTSM003804.8E-172790IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-132785IPR016177DNA-binding domain
CDDcd000186.97E-212786No hitNo description
Gene3DG3DSA:2.40.330.103.2E-30145241IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-26147243IPR015300DNA-binding pseudobarrel domain
CDDcd100174.60E-25149261No hitNo description
SMARTSM010192.4E-17150255IPR003340B3 DNA binding domain
PROSITE profilePS5086311.984150260IPR003340B3 DNA binding domain
PfamPF023622.6E-23150241IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MRLSEPPTEA ALVSAAIKKG SFSDNIKYKG VVQQPNSRWG AQIYVDHKRI WLGTFSSAVK  60
AAMAFDSASI KLRSFDTNSE RNFPWSDLTV QEPVFQNGYT REAVLNMIKD GSYQREFIDF  120
LKNRSQAVVG LKQNRRDEEP NKCFSSRQLF QKELTASDVG RLNRLVIPKK YAVKYLPFIS  180
EREEGEIIDD VEVVFYDREM RPWKFRYCYW TSSQSFVFTR GWIGFVREKR LKEKDVITFY  240
TCDVPTLEGQ SRKFSMIDIH RFSDNDSVVT DEEVNKTVHD VSDDVMKPEK FFNSKLGEGE  300
NRGGFMLFGV RIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2214923913100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009147811.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893010.0AC189301.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB030D08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009147811.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-147RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLM4DQS60.0M4DQS6_BRARP; Uncharacterized protein
STRINGBra018869.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-140RAV family protein