PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009147781.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 338aa    MW: 38493.6 Da    PI: 8.7326
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009147781.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.23e-114391155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++ykGV + + +g W A+I+       ++r++lg+f +a eAa+ ++ a  kl+g
  XP_009147781.1 43 TKYKGVVQQP-NGHWGAQIYSE-----HRRIWLGTFKSAAEAAASYDSASIKLRG 91
                    69********.8******9994.....5***********************9997 PP
2B388.17.3e-28176276186
                     EEEE-..-HHHHTT-EE--HHH.HTT........---............--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkke..........esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                     f k+ltpsdv+k++rlv+pkk+a +h        +   e           +++++++d+  r+W+++++y+++s+++v+t+GW++Fv++++Lke+
  XP_009147781.1 176 FSKELTPSDVGKLNRLVIPKKHAVKHlpfisdgqK---EreegeiggalDDVEVVFYDRAMRQWKFRYCYWRSSQSFVFTRGWNGFVREKRLKEK 267
                     889****************************6541...44567777777899******************************************* PP

                     -EEEEEE-S CS
              B3  78 DfvvFkldg 86 
                     D +vF++ +
  XP_009147781.1 268 DAIVFYHCD 276
                     ******755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-74391IPR001471AP2/ERF domain
CDDcd000181.03E-2243102No hitNo description
Gene3DG3DSA:3.30.730.102.2E-1644101IPR001471AP2/ERF domain
PROSITE profilePS5103217.84644101IPR001471AP2/ERF domain
SMARTSM003807.4E-1644109IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-1344102IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.103.1E-31168274IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.23E-27173280IPR015300DNA-binding pseudobarrel domain
CDDcd100175.84E-27174274No hitNo description
PfamPF023625.4E-25176276IPR003340B3 DNA binding domain
SMARTSM010193.9E-23176288IPR003340B3 DNA binding domain
PROSITE profilePS5086311.688176288IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MNSLNEAKTM TETSGSSNSV LCLANPMEQP HVSTTTRSVL SNTKYKGVVQ QPNGHWGAQI  60
YSEHRRIWLG TFKSAAEAAA SYDSASIKLR GIDANSYRNF PWCEITTHEP AFQANYTTEA  120
VLNMIKDCSY QHKFMEYLRR RSQLVDFANI NIVAAASKQS RGGRGVQEPF SCTPLFSKEL  180
TPSDVGKLNR LVIPKKHAVK HLPFISDGQK EREEGEIGGA LDDVEVVFYD RAMRQWKFRY  240
CYWRSSQSFV FTRGWNGFVR EKRLKEKDAI VFYHCDVPTN VMTLQGQNNS FLMIDVDYFT  300
DKGPVAPKEV DKMVHNTSEE EMKTETKGGF MLFGVRIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-2317527213100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009147781.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009147781.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6881e-167RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLM4DQV10.0M4DQV1_BRARP; Uncharacterized protein
STRINGBra018894.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-160RAV family protein