PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009147629.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 207aa    MW: 23768.2 Da    PI: 10.0983
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009147629.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.22.1e-23959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien  + qv+f++Rr+ ++KKA+ LS+LCda+va+i+fsstg++y +ss
  XP_009147629.1  9 KKIENANRLQVSFTNRRKVLMKKANDLSILCDADVALIVFSSTGNVYNFSS 59
                    68***********************************************96 PP
2K-box37.88.3e-14811572299
           K-box  22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + + +e++ Lq    + +G++Le +s+ +L +Le+qL++sl +++++K+ +ll+q+e+++ +ek++ een+ Lrk++e
  XP_009147629.1  81 ESMASELKRLQLAVERAKGKELEGMSFSDLISLESQLNDSLLRVKDQKT-ILLNQLERSRLQEKRTLEENRLLRKQIE 157
                     678889999**9999*******************************997.788***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.932161IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-30160IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-21323IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-25373IPR002100Transcription factor, MADS-box
PfamPF003191.1E-201057IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-213859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.22873162IPR002487Transcription factor, K-box
PfamPF014862.2E-981156IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MVRGKIELKK IENANRLQVS FTNRRKVLMK KANDLSILCD ADVALIVFSS TGNVYNFSSR  60
SMEQILYRYG YVAADHRQRE ESMASELKRL QLAVERAKGK ELEGMSFSDL ISLESQLNDS  120
LLRVKDQKTI LLNQLERSRL QEKRTLEENR LLRKQIESMV GRGSSGPQVE PEKNDNEEHL  180
SDTSLQLGWG KRKKLKIERP AITLSSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-15182182MEF2C
5f28_B5e-15182182MEF2C
5f28_C5e-15182182MEF2C
5f28_D5e-15182182MEF2C
6bz1_A4e-15189190MEF2 CHIMERA
6bz1_B4e-15189190MEF2 CHIMERA
6bz1_C4e-15189190MEF2 CHIMERA
6bz1_D4e-15189190MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.231614e-53flower| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During the reproductive phase, accumulates in immature buds and at the base of the floral organs, and in the receptacle, ovules, anther filaments, and stigma and style of open flowers. Later observed in sporogenous tissue of anthers. During male gametogenesis, expressed in the microspores before they separate from each other. Later present at high levels within pollen grains up to stage 13 of flower development, when anthers dehisce. During carpel development, first detected in developing ovules. After fertilization, confined to globular structures or nodules of proliferating free nuclear endosperm required for embryo development. Disappears from the endosperm at to the heart stage of embryo development, when very little nuclear endosperm remains. Never detected in developing embryos at any stage. In young seedlings, present everywhere except in a portion of the hypocotyl and in newly emerging leaves. {ECO:0000269|PubMed:11115127, ECO:0000269|PubMed:17521410}.
UniprotTISSUE SPECIFICITY: Mostly expressed in pollen, roots, flowers and siliques, and to a lower extent, in stems and leaves. Expressed in the endosperm and in developing male and female gametophytes. Also present in seedlings. {ECO:0000269|PubMed:11115127, ECO:0000269|PubMed:12837945, ECO:0000269|PubMed:12949148, ECO:0000269|PubMed:16028119, ECO:0000269|PubMed:17521410}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009147629.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018515075.13e-88PREDICTED: agamous-like MADS-box protein AGL18
SwissprotQ9M2K86e-75AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLM4DR751e-139M4DR75_BRARP; Uncharacterized protein
STRINGBra019018.1-P1e-140(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60612139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.13e-77AGAMOUS-like 18