PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009147497.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 624aa MW: 70173.6 Da PI: 5.3661 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.4 | 8.2e-30 | 266 | 323 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK vkg+++prsYY+C+++gC +kk+ver+a+d +++ +tY g+H h XP_009147497.1 266 NDGHRWRKYGQKIVKGNPNPRSYYKCSHKGCIMKKHVERAADDLRMLLVTYYGKHGHA 323 7******************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.4E-30 | 251 | 325 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.364 | 260 | 325 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.84E-26 | 260 | 325 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.2E-33 | 265 | 324 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.6E-24 | 266 | 322 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 624 aa Download sequence Send to blast |
MSDYGDGNFM DMVSSRWAPP LSTSLSDNGL NPISDIFLQT NQSKQRPGLV DRVAARIGRN 60 IPPIRTDNLS PCAVVFKDPK TVPFGIEISP GLSPSVMLQS RSQLINPYSF PNDEPPETVE 120 NSGDDHAKTM IFNKDVPYQP MHFDLPPQEA LIPSHVDPIG APLVASFESE VADDTDTKLM 180 SLDDESESQD EEESNEDEDT DDPSKLGRKR RIDEEEDDDI ADEHEVKPSS PKRRKYDEVS 240 NMMTALRASN NPRVRLRMET EEAQPNDGHR WRKYGQKIVK GNPNPRSYYK CSHKGCIMKK 300 HVERAADDLR MLLVTYYGKH GHAAPLARSS SSSGPKNLYR SSVPARLGRP PFSSSSAAQD 360 MRSFPYPSAS APRDMKRFGY PSALAPQAMR PFPSSLNPGV DMTHLYKTGL SKLPSLPVNQ 420 NHGFMDQNAE PWVNQNHGFM GQNAEPRVNQ NHGFMSQNAE PQVNQNHGFM GQNAEPWVNQ 480 NHGFMGQNAE PRVNQNHGFM GENVEPQVNQ NHGFMGQNVE PQVNQNHGFM GQNDEPWLNQ 540 NHGFMGQNDE PWLNQNHGLM DQNDEPWVNQ NHGFIGQNDE PWLNQNYGFM GQNDEPKTDH 600 VIPDGTEVYK GLRERMLANL GVKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-21 | 266 | 325 | 18 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 4e-21 | 266 | 325 | 18 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009147497.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009147496.1 | 0.0 | PREDICTED: probable WRKY transcription factor 10 | ||||
TrEMBL | M4FA92 | 0.0 | M4FA92_BRARP; Uncharacterized protein | ||||
STRING | Bra038006.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55600.1 | 4e-43 | WRKY DNA-binding protein 10 |