PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009147412.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 272aa    MW: 31490.9 Da    PI: 6.51
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009147412.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.8e-1874126456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     + +++ eq+++Le+ Fe  ++++ e++ +LAk lg++ rq+ +WFqNrRa++k
  XP_009147412.1  74 KKRLQLEQVKVLEKSFELGNKLDPERKIQLAKALGMQPRQIAIWFQNRRARWK 126
                     4457889*********************************************9 PP
2HD-ZIP_I/II125.42.6e-4072164193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekk+rl+ eqvk+LE+sFe  +kL+perK +la++Lg+qprq+a+WFqnrRAR+kt+qlE+dy++Lk+++d+lk++n++L +++++L +e+++
  XP_009147412.1  72 EKKKRLQLEQVKVLEKSFELGNKLDPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERDYDSLKKQFDSLKSDNDSLLAHNKKLLAEVMS 164
                     69*************************************************************************************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.19E-1967130IPR009057Homeodomain-like
SMARTSM003891.7E-1771132IPR001356Homeobox domain
PROSITE profilePS5007116.08272128IPR001356Homeobox domain
CDDcd000861.66E-1673129No hitNo description
PfamPF000462.3E-1574126IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.1E-1976136IPR009057Homeodomain-like
PRINTSPR000312.9E-599108IPR000047Helix-turn-helix motif
PROSITE patternPS000270103126IPR017970Homeobox, conserved site
PRINTSPR000312.9E-5108124IPR000047Helix-turn-helix motif
PfamPF021832.0E-16129168IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MAFPQHGFMF QQLHEDISPD QLPSCLPPHP FNGGGNYMMN RSMSLTNVRD DPHQSVDEEN  60
LSDDGSHMML GEKKKRLQLE QVKVLEKSFE LGNKLDPERK IQLAKALGMQ PRQIAIWFQN  120
RRARWKTRQL ERDYDSLKKQ FDSLKSDNDS LLAHNKKLLA EVMSLRNKDY NEASIIKREA  180
EASWSNNGST ENSSDINLEI PRETTTTHVN TIKNLFPSSI PSSTHHQDHH HQNNEMVQEE  240
SFCNMFNGID ETTSAGYWGW SDPNHNHHHQ FN
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed 3 day after germination (DAG) in first rosette leaf primordia around the veins in the apical part of the leaf and close to the midvein in the basal part of the leaf. At later stage, expressed in new forming veins, and veins and fascicular cambium of mature leaves. {ECO:0000269|PubMed:12644682}.
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009147412.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288900.0AK228890.1 Arabidopsis thaliana mRNA for putative homeobox-leucine zipper protein, complete cds, clone: RAFL16-20-K05.
GenBankAY0876310.0AY087631.1 Arabidopsis thaliana clone 3722 mRNA, complete sequence.
GenBankBT0292210.0BT029221.1 Arabidopsis thaliana At3g01220 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009147412.10.0PREDICTED: homeobox-leucine zipper protein ATHB-20
RefseqXP_013640328.10.0homeobox-leucine zipper protein ATHB-20
SwissprotQ8LAT01e-166ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLA0A397ZGU60.0A0A397ZGU6_BRACM; Uncharacterized protein
TrEMBLA0A3P5ZN360.0A0A3P5ZN36_BRACM; Uncharacterized protein (Fragment)
TrEMBLM4FDG40.0M4FDG4_BRARP; Uncharacterized protein
STRINGBra039135.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01220.11e-168homeobox protein 20