PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009147399.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 360aa    MW: 41179.4 Da    PI: 8.7171
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009147399.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.4e-1856103148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl
   XP_009147399.1  56 KGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLQRCGKSCRLRWTNYL 103
                      79********************************************97 PP
2Myb_DNA-binding54.52.7e-17109154148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
   XP_009147399.1 109 RGKFTVQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 154
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-2647106IPR009057Homeodomain-like
PROSITE profilePS5129418.90451103IPR017930Myb domain
SuperFamilySSF466896.97E-3153150IPR009057Homeodomain-like
SMARTSM007171.7E-1455105IPR001005SANT/Myb domain
PfamPF002497.2E-1756103IPR001005SANT/Myb domain
CDDcd001673.88E-1158103No hitNo description
PROSITE profilePS5129426.753104158IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.8E-27107159IPR009057Homeodomain-like
SMARTSM007172.6E-17108156IPR001005SANT/Myb domain
PfamPF002491.6E-16109154IPR001005SANT/Myb domain
CDDcd001672.12E-11111154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010091Biological Processtrichome branching
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MPIHVKDQEK GSLQNLNRDI FCCVSPLLXI RAKPREQILW IIMFTSPCCD KDGLKKGPWT  60
PEEDQKLLAY IEEHGHGSWR SLPEKAGLQR CGKSCRLRWT NYLRPDIKRG KFTVQEEQTI  120
IQLHALLGNR WSAIATHLPK RTDNEIKNYW NTHLKKRLVK MGIDPVTHKH KNETLLSSTG  180
QSKNLATLSH MAQWESARLE AEARLARESK LLHVQHHRNN KPAAPDYCLA HKSSSTNWTK  240
PNQGNGDQQL ESPTSTVTFS ENLPLMIMHL GIPTENRNSR VAVSSSIKDS DHDWMKQINC  300
PKEGIEEGFT SLLLRDSVDR SLSAGKNDES EYSYYEDNKN YWNSILSLVD SSPSHSPTMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26541585108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}.
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009147399.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667330.0KC966733.1 Brassica napus MYB transcription factor 106 (MYB106.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018514324.10.0PREDICTED: myb-related protein Hv1
SwissprotQ9LE630.0MY106_ARATH; Transcription factor MYB106
TrEMBLM4FDH10.0M4FDH1_BRARP; Uncharacterized protein
STRINGBra039142.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.10.0myb domain protein 106