PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009147205.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 304aa    MW: 33930.6 Da    PI: 4.1754
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009147205.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF245.1e-081452240
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                    ri     + +tf+kR  g+  K + L+ L+da++av+  
  XP_009147205.1 14 RITKRESAATTFTKRSYGLHSKVSQLCLLTDAQIAVLAT 52
                    788888999***************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-4564IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.073550IPR002100Transcription factor, MADS-box
CDDcd002661.82E-16684No hitNo description
SuperFamilySSF554551.7E-11678IPR002100Transcription factor, MADS-box
PfamPF003192.6E-81455IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MVKGGTKRKA TMERITKRES AATTFTKRSY GLHSKVSQLC LLTDAQIAVL ATPPSSHSNV  60
SFFSFGHSSV DSIVTAFLTG ERPAVREEID DHEAFGICLA RKELGLPQWW EDDALLKSKS  120
PQELSHAINS MSSLLTKINE LRAEDAEAEP PLKKQKKKNE ETMKKTEPTV EQTLLLPSDS  180
SDKTLDYNNN NNDSLEEIDF DQLIDLDLDL DFDFESMNSS DNNDETMKMT EPLDQPLLLP  240
YDICASPDNN NTYSTGEMSL DYGIDKQLQE TTIAMSSVAC DDGVSALNED DINFSDYLTQ  300
FLQS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009147205.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009147205.10.0PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLM4EXF50.0M4EXF5_BRARP; Uncharacterized protein
STRINGBra033492.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2028033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.11e-58M-type_MADS family protein