PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009146821.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 164aa MW: 19223.4 Da PI: 5.8064 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.4 | 2.9e-12 | 89 | 133 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+ E+ ++++ ++G g+Wk+++r+ k+R++ q+ s+ qky XP_009146821.1 89 PWTAKEHGEFLKGLGEFGRGDWKSVSRKYVKTRSARQVASHAQKY 133 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-8 | 79 | 137 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.571 | 82 | 138 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.35E-13 | 84 | 137 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-13 | 85 | 137 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 4.0E-7 | 86 | 136 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.22E-6 | 89 | 134 | No hit | No description |
Pfam | PF00249 | 5.4E-9 | 89 | 133 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 164 aa Download sequence Send to blast |
MMAWWEQWGR DEDKMFEEAL VLTENVPNRF ETIASYLEMP LEVVKHHYDA LVHDVELIES 60 GPIDYQDHPD GILSPETKHV EKDKKRGRPW TAKEHGEFLK GLGEFGRGDW KSVSRKYVKT 120 RSARQVASHA QKYFQRQDME NHAKKRSSIH DMTLVDDNDA DVNE |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bra.26310 | 0.0 | flower |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009146821.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009146821.1 | 1e-120 | PREDICTED: transcription factor DIVARICATA-like | ||||
TrEMBL | M4EM36 | 1e-107 | M4EM36_BRARP; Uncharacterized protein | ||||
STRING | Bra029856.1-P | 1e-108 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17289 | 7 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04760.1 | 4e-46 | MYB family protein |