PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009146779.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 364aa    MW: 41454.1 Da    PI: 8.3998
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009146779.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3443.9e-14241071496
                     T-EE--HHH.HTT........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  14 grlvlpkkfaeeh........ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     + l +p  f ++h        + +   +  ++l++  s  +Wevk+  ++++    lt+GW+eF  +++L++gD+v+F++dg+  f  +v+ 
  XP_009146779.1  24 SYLNIPMAFYSKHikgttdegNANAGDKAVVKLRSdASDLTWEVKM--DGRR----LTQGWQEFTTSHDLRVGDIVIFRHDGDLLF--HVTT 107
                     4589**********9999976333334556777776777*******..9998....***********************8875444..6655 PP
2B356.26.1e-18149241498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     + +++ +l+++ l lp+ f +++g+ ++e  +++l +e  + W+  liy k+ g +++++GW++F+++n+ +++  ++Fkl++  ++++v+++++
  XP_009146779.1 149 ARVTPTNLRKDSLFLPRGFSRSNGLTNRE-CEIILLNEYEKPWTASLIYYKTTGDVYIRTGWRRFCRENRKRVNGLLTFKLVQ-AGTKPVLQLCS 241
                     567899999**************998655.6**************************************************98.78889999997 PP
3B347.72.8e-15260346189
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f++ ++++++l+++ l+lp kf+  +g+++++  ++tl d+ g + +  l+ +++ g++ ++k W+eF++ang+k+g++++++l++++e
  XP_009146779.1 260 FLTLTLTPYSLTKSKLCLPGKFVWLNGIENAR--KITLVDRYGVKRTTSLRPDNNYGAMRMGKEWREFCEANGVKAGESFTLELIKEEE 346
                     677788999**************999988555..8********999999999********************************98744 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.2E-215113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-197113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.25111111IPR003340B3 DNA binding domain
CDDcd100177.62E-1412108No hitNo description
SMARTSM010196.3E-1914111IPR003340B3 DNA binding domain
PfamPF023626.6E-925100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-18140242IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.94E-20142245IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.3E-24146243IPR003340B3 DNA binding domain
CDDcd100171.91E-18146241No hitNo description
PROSITE profilePS5086312.238146242IPR003340B3 DNA binding domain
PfamPF023624.8E-17148241IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-16252345IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-16256345IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-13259343No hitNo description
SMARTSM010193.6E-18260364IPR003340B3 DNA binding domain
PROSITE profilePS5086311.533260363IPR003340B3 DNA binding domain
PfamPF023622.3E-13260346IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MANASASSPM NPHFFQPLLP GFQSYLNIPM AFYSKHIKGT TDEGNANAGD KAVVKLRSDA  60
SDLTWEVKMD GRRLTQGWQE FTTSHDLRVG DIVIFRHDGD LLFHVTTFGP SCCEIQYDDV  120
FHKSSDSDLA MNQETREAVS PSDKSCFVAR VTPTNLRKDS LFLPRGFSRS NGLTNRECEI  180
ILLNEYEKPW TASLIYYKTT GDVYIRTGWR RFCRENRKRV NGLLTFKLVQ AGTKPVLQLC  240
SSMHNRDCLR TSSSRSQERF LTLTLTPYSL TKSKLCLPGK FVWLNGIENA RKITLVDRYG  300
VKRTTSLRPD NNYGAMRMGK EWREFCEANG VKAGESFTLE LIKEEEEEEE DTAATHLLKF  360
CTKA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009146779.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146779.10.0PREDICTED: B3 domain-containing protein REM7-like
TrEMBLM4EM720.0M4EM72_BRARP; Uncharacterized protein
STRINGBra029892.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.13e-94B3 family protein