PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009146754.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 205aa MW: 22785.2 Da PI: 8.4864 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.9 | 8.4e-39 | 44 | 143 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+l+r+C++ C++ap+f ++++ +fa vhk+FGasnv+kll+++pee+r+++++sl+yeA++r++dPvyG++g i +lq+++ +l++++a XP_009146754.1 44 SCAACKLLKRRCTPTCIFAPHFRSSDQITFAKVHKVFGASNVSKLLSEVPEEQRQETVNSLAYEADVRLKDPVYGCIGAIASLQKKMLELQHDIA 138 6*********************************************************************************************9 PP DUF260 96 llkee 100 +++++ XP_009146754.1 139 VARNR 143 99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.5 | 43 | 144 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.0E-38 | 44 | 141 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MLIKNPIIYK GNHQINLTIN HSLTFYHPKR RFEMRGHEPR SSSSCAACKL LKRRCTPTCI 60 FAPHFRSSDQ ITFAKVHKVF GASNVSKLLS EVPEEQRQET VNSLAYEADV RLKDPVYGCI 120 GAIASLQKKM LELQHDIAVA RNRLLAHNAA GGVNNNNSHL LVSPLVDDAS QLAAFLDLVP 180 YSDLMLLDGS GLDAYLFDIG QPPFV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-39 | 39 | 153 | 6 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-39 | 39 | 153 | 6 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009146754.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254608 | 1e-135 | AC254608.1 Capsella rubella clone CAP16-D12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009146754.1 | 1e-152 | PREDICTED: LOB domain-containing protein 21 | ||||
Swissprot | Q9SRL8 | 1e-101 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | A0A291LR03 | 1e-150 | A0A291LR03_BRARR; Transcription factor LBD21 | ||||
STRING | Bra034867.1-P | 1e-124 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10255 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 8e-91 | LOB domain-containing protein 21 |
Publications ? help Back to Top | |||
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