PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009146740.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 254aa    MW: 28798.4 Da    PI: 6.7993
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009146740.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.1e-083277447
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     WT+eE + + +a + ++ +   +W +Ia++++ g+t  ++ + + k+
   XP_009146740.1 32 WTKEENKMFERALAIYPEDspdRWFKIASMIP-GKTVFDVMNQYSKL 77
                     ********************************.********999875 PP
2Myb_DNA-binding409.3e-13124168347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
   XP_009146740.1 124 PWTEEEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKY 168
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.952780IPR017884SANT domain
SMARTSM007175.6E-92880IPR001005SANT/Myb domain
SuperFamilySSF466896.63E-133085IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-43176IPR009057Homeodomain-like
CDDcd001676.12E-93277No hitNo description
PfamPF002492.8E-73276IPR001005SANT/Myb domain
PROSITE profilePS5129419.439117173IPR017930Myb domain
SuperFamilySSF466892.28E-15119172IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-17120172IPR006447Myb domain, plants
SMARTSM007171.7E-10121171IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-11121173IPR009057Homeodomain-like
CDDcd001673.75E-9124168No hitNo description
PfamPF002494.0E-10124168IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
METLNPLSHV PISDYRFVGQ DMMSLQSPSS IWTKEENKMF ERALAIYPED SPDRWFKIAS  60
MIPGKTVFDV MNQYSKLEED VFDIEEGRVP IPGYPSPLGF TQDTCRKRPN GARGSDHDRK  120
KGVPWTEEEH RRFLLGLLKY GKGDWRNISR NFVVSKTPTQ VASHAQKYYQ RQLSGAKDKR  180
RPSIHDITTG NLLNANLNRS FSDHRDILPD LGFIEKDNAE EGLMCMSPNL FSPSSAPFDD  240
AFNFAGVNAF SAGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-162299178RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009146740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0561800.0AY056180.1 Arabidopsis thaliana putative MYB-family transcription factor (At3g11280) mRNA, complete cds.
GenBankAY0912650.0AY091265.1 Arabidopsis thaliana putative MYB-family transcription factor (At3g11280) mRNA, complete cds.
GenBankAY5503080.0AY550308.1 Arabidopsis thaliana MYB transcription factor (At3g11280) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146740.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H74e-68DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A397ZLR00.0A0A397ZLR0_BRACM; Uncharacterized protein
STRINGBo5g136680.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.21e-158MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]