PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009146703.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 258aa MW: 28937.9 Da PI: 7.7994 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 104.5 | 5.8e-33 | 24 | 135 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k ltpsdv+k++rlv+pk++ae++ +++e+++ l++edesg+sW+++++y+++s++yvltkGW+++vk+++L++gD+v+F XP_009146703.1 24 FEKSLTPSDVGKLNRLVIPKQHAERYlplnncggggdvtAESTEKGVLLSFEDESGKSWKFRYSYWNSSQSYVLTKGWSRYVKDKHLNAGDVVLF 118 99*********************************99997777899************************************************* PP EE-SS.SEE..EEEEE-S CS B3 83 kldgr.sefelvvkvfrk 99 +++ r + +l+++++r+ XP_009146703.1 119 QRH-RfDIHRLFIGWRRR 135 *65.44888899999987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.1E-41 | 16 | 144 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-31 | 20 | 136 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.99E-29 | 23 | 124 | No hit | No description |
SMART | SM01019 | 4.7E-25 | 24 | 136 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-30 | 24 | 135 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.676 | 24 | 136 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 258 aa Download sequence Send to blast |
MSVNHYSNTL SSHNHHNEHK ESLFEKSLTP SDVGKLNRLV IPKQHAERYL PLNNCGGGGD 60 VTAESTEKGV LLSFEDESGK SWKFRYSYWN SSQSYVLTKG WSRYVKDKHL NAGDVVLFQR 120 HRFDIHRLFI GWRRRGEASS SSAVSAVTQD PRANTTAYWN GLTTPYRQVH ASTSSYPNNI 180 HQEYSHYGPV AETPTVAAGS SKTVRLFGVN LECHSDVVEP PPCPDAYNGQ HIYYYSTPHP 240 MNISFAGEAM EQVGDGRG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 6e-48 | 20 | 135 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 6e-48 | 20 | 135 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bra.18292 | 0.0 | leaf |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009146703.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189547 | 0.0 | AC189547.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004P05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009146703.1 | 0.0 | PREDICTED: B3 domain-containing protein At3g11580 | ||||
Swissprot | Q8RYD3 | 1e-143 | Y3158_ARATH; B3 domain-containing protein At3g11580 | ||||
TrEMBL | M4F182 | 0.0 | M4F182_BRARP; Uncharacterized protein | ||||
STRING | Bra034828.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1220 | 28 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G11580.1 | 1e-137 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|