PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009146641.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 244aa    MW: 25371.4 Da    PI: 10.1006
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009146641.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.4e-073558225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C  f+ t  C++G++C+F H
  XP_009146641.1 35 KSKPCTKFFSTSGCPFGENCHFLH 58
                    7789******************** PP
2zf-CCCH33.76.1e-11213238127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+ C +f++ G C +GdrC+FaHg+
  XP_009146641.1 213 FKTKMCERFSK-GSCTFGDRCHFAHGE 238
                     69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.8873361IPR000571Zinc finger, CCCH-type
SMARTSM003560.333360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-63458IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-83558IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-53558IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.63E-15102183IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.4E-15112181IPR004088K Homology domain, type 1
SMARTSM003229.2E-10112182IPR004087K Homology domain
PROSITE profilePS5008414.068113177IPR004088K Homology domain, type 1
PfamPF000139.1E-12115179IPR004088K Homology domain, type 1
CDDcd001052.18E-13115177No hitNo description
Gene3DG3DSA:4.10.1000.105.0E-16207242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.446212239IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6212238IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-8212242IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-7213238IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDARKRGRPE AGSFNSNGGG FKKSKQEMES GLGSKSKPCT KFFSTSGCPF GENCHFLHFV  60
PGGYNPMAQM TNMGSPMSQV SRNMQGSGGG GGGGRFSGRG ESGPGHVSSF GASATAKISV  120
DASLAGAIIG KGGVCSKQIC RQTGAKLSIQ DHERDPNLKN IELEGTFEQI NEASAMVREL  180
IGRLNSASRR PPGGGGGGGG LGSEGKPHPG SNFKTKMCER FSKGSCTFGD RCHFAHGEAE  240
LRRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.26900.0flower| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009146641.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535310.0AK353531.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-B10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146641.11e-175PREDICTED: zinc finger CCCH domain-containing protein 36 isoform X1
SwissprotQ9C7C31e-141C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLA0A078F9J81e-174A0A078F9J8_BRANA; BnaA05g26890D protein
TrEMBLA0A397ZKQ31e-174A0A397ZKQ3_BRACM; Uncharacterized protein
TrEMBLM4F1311e-174M4F131_BRARP; Uncharacterized protein
STRINGBra034776.1-P1e-174(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-122C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]