PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009146598.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 540aa    MW: 59055.1 Da    PI: 7.5033
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009146598.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.11.7e-09182205326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     ++ C ++++t tCk+G+ CkF H+
  XP_009146598.1 182 EKDCTHYMQTRTCKFGEGCKFDHP 205
                     678********************9 PP
2zf-CCCH33.28.5e-11231257127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C+++ +t  CkyG rCkF+H++
  XP_009146598.1 231 PGEPDCPYYIKTQRCKYGLRCKFNHPK 257
                     5789*********************96 PP
3zf-CCCH38.52e-12276300327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C f+++tG Ck+G +CkF+H++
  XP_009146598.1 276 EPPCTFYMKTGKCKFGLTCKFHHPK 300
                     79*********************96 PP
4zf-CCCH38.22.4e-12348372327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C+f+++tG CkyG++C+++H++
  XP_009146598.1 348 EVDCPFYLKTGSCKYGATCRYNHPE 372
                     679********************96 PP
5zf-CCCH41.12.9e-13433458126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C+++++tG+Ck+G+rC+F+H+
  XP_009146598.1 433 PGQPECDYYMKTGECKFGERCRFHHP 458
                     5789*********************8 PP
6zf-CCCH41.12.9e-13490512527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C+++++tGtCkyG++CkF H+p
  XP_009146598.1 490 NCPYYMKTGTCKYGATCKFDHPP 512
                     7********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.258179207IPR000571Zinc finger, CCCH-type
SMARTSM003560.23181206IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5181206IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-7182205IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-4230257IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.826230258IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-7232257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-5235257IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-4236255IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-6273300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601273301IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-10276300IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-5277301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-5278299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3345373IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6345372IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-10348372IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5349373IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4351372IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-7432459IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.788432460IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-6434463IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10434458IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5438460IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.375485513IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-7485512IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6489512IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-11489512IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5491510IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MAAHRHQLFT YALQPSLPAA STASPAPPPP QPQPQQNLSL SSLYASSAAD RYYPDATFRF  60
LSRDGSESLT NNYQPTVASS SSSSAMYHHH LPNAASHLAY PPQLMQHQEA WPPGVEPPAA  120
AAVEPLPPGV KRTSEALYYP TLYGAHNPMG QTEAWYTTDY LTKRLKLEST SHLPVYPQRA  180
GEKDCTHYMQ TRTCKFGEGC KFDHPVWVPE GGIPDWKEAP VVPNDEYPER PGEPDCPYYI  240
KTQRCKYGLR CKFNHPKTAA AVTVETPDAL PERPSEPPCT FYMKTGKCKF GLTCKFHHPK  300
DIQLPSSSQD NGSTEAVTSE PDVTNNPHVT FAPAAYYNSK GLPARPAEVD CPFYLKTGSC  360
KYGATCRYNH PERTAFTPQA GGINYPLVSP TSASVNLGLI NSAASLYQTL AQPSVDVYNH  420
ALGALTATYP QRPGQPECDY YMKTGECKFG ERCRFHHPAD RLNATSKQAP QQPNVKLSLA  480
GYPRREGAQN CPYYMKTGTC KYGATCKFDH PPPGEVMAKT ASEAEADAAA AAGGATDTTQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.147470.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009146598.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893350.0AC189335.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039A19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013749922.10.0zinc finger CCCH domain-containing protein 37-like isoform X2
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A078F1S50.0A0A078F1S5_BRANA; BnaA05g26510D protein
TrEMBLA0A397ZKL40.0A0A397ZKL4_BRACM; Uncharacterized protein
STRINGBra034744.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97612836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)