PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009146593.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 294aa    MW: 33228.6 Da    PI: 7.9532
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009146593.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-172471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEd +l+++++ +G ++W+++++  g+ R++k+c++rw +yl
   XP_009146593.1 24 RGLWSPEEDAKLLRYITTHGHPSWSSVPKLAGLQRCGKSCRLRWINYL 71
                     788*******************************************97 PP
2Myb_DNA-binding55.41.4e-1777120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eE++ ++d+++ lG++ W+ Ia++++ gRt++++k++w++
   XP_009146593.1  77 RGSFTAEEEQTIIDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 120
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-251674IPR009057Homeodomain-like
PROSITE profilePS5129417.1281971IPR017930Myb domain
SuperFamilySSF466894.49E-2922118IPR009057Homeodomain-like
SMARTSM007174.6E-122373IPR001005SANT/Myb domain
PfamPF002496.3E-152471IPR001005SANT/Myb domain
CDDcd001671.99E-102771No hitNo description
PROSITE profilePS5129426.60372126IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2675126IPR009057Homeodomain-like
SMARTSM007176.5E-1676124IPR001005SANT/Myb domain
PfamPF002495.1E-1677120IPR001005SANT/Myb domain
CDDcd001677.36E-1279119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSEKWEMKRD EMGHRCCGKH KVKRGLWSPE EDAKLLRYIT THGHPSWSSV PKLAGLQRCG  60
KSCRLRWINY LRPDLKRGSF TAEEEQTIID VHRILGNKWA QIAKHLPGRT DNEVKNFWNS  120
CIKKKLLSQG LDPSTHNLMP SHKRSASSSS NTTPKPSKTK SIMTNPTFDQ STTTFSITNV  180
NPYTSNKPNK VKSPDQTTIP SQTVIPIDHT MSSLLNDENM IPNWSNVDGM APIHEEAPMF  240
SSEKAVMGVE DDDLNMDILF NTPSSSTFDP DFGSMFSSAM SMDFNPMDDL GWTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-30241267108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009146593.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893350.0AC189335.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039A19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146593.10.0PREDICTED: transcription repressor MYB6
TrEMBLM4F0Z30.0M4F0Z3_BRARP; Uncharacterized protein
STRINGBra034738.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79552539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-172myb domain protein 67