PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009146515.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 227aa MW: 25885.2 Da PI: 5.3471 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.3 | 2.6e-22 | 114 | 208 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++++++lk++ l lp +++ ++k++ ++++l +++g+sW+v l+++ ++g+y++++GW++F+ +n+ + gD +vF l+++ ++++++ v++ XP_009146515.1 114 AEVTASNLKEDKLHLPVGATSSTALNKQC-QEMILVNKEGNSWTVSLQFSESGGMYYIGRGWRKFCLDNRCDIGDLFVFNLIEDGKTTPLMCVCS 207 678999**************999999877.5*****************************************************9999*****98 PP S CS B3 99 k 99 + XP_009146515.1 208 E 208 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.08 | 1 | 63 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.52 | 2 | 63 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-12 | 10 | 70 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.51E-10 | 11 | 69 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-18 | 110 | 201 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.66E-16 | 111 | 197 | No hit | No description |
PROSITE profile | PS50863 | 13.606 | 111 | 209 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.3E-18 | 111 | 200 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.4E-20 | 112 | 209 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.9E-21 | 114 | 208 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MNQKIWKLRS DTSDKTWEVI QEGRRLTGGW KDFTTAHDLR IVDIFILKDE GDMVFHVTPF 60 GPSCCDIQYT HPHIIKEEAD ADDAADDADD NEHHHKIRGT WAMSSFSFDY CFLAEVTASN 120 LKEDKLHLPV GATSSTALNK QCQEMILVNK EGNSWTVSLQ FSESGGMYYI GRGWRKFCLD 180 NRCDIGDLFV FNLIEDGKTT PLMCVCSESK ECSELLSKHL SRKKKEC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009146515.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189464 | 1e-115 | AC189464.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB075L03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013704382.1 | 1e-155 | B3 domain-containing protein REM9-like | ||||
TrEMBL | M4EEZ8 | 1e-169 | M4EEZ8_BRARP; Uncharacterized protein | ||||
STRING | Bra027360.1-P | 1e-170 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 1e-46 | B3 family protein |