PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009146443.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 513aa MW: 57023.1 Da PI: 8.4003

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009146443.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	96	118	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_009146443.1 96 FVCEICNKGFQRDQNLQLHRRGH 118 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.62E-6	95	118	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	95	118	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.017	96	118	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	96	118	IPR007087	Zinc finger, C2H2
Pfam	PF12171	8.2E-5	96	118	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	98	118	IPR007087	Zinc finger, C2H2
SMART	SM00355	99	138	168	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.62E-6	168	193	No hit	No description
SMART	SM00355	180	173	193	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence Send to blast
MTSKDMLLHQ QVQQQQEENM SNLTSSGDQA SVSSGNRTEA SGSNFFHHQQ QQEEQQQFFV 60 PEPQPQKKRR NQPGNPDPES EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL 120 PWKLKQRSNK EVIRKKVYVC PETSCVHHDP SRALGDLTGI KKHFSRKHGE KKWKCDKCSK 180 KYAVQSDCKA HSKTCGTKEY RCDCGTLFSR RDSYITHRAF CLALAEETAR EVVTPQDQNH 240 QPNPLMIHQS SHHHHQAQPN MNISSSSSSS HNIINTLHFE TNVNVTNNCE SSSNHPHTFP 300 MKIEQQQTGD QIINYHHHGV PPWLAPQPQD RTSSNPNPSN GGGGGGGLFS LAASPVMSAT 360 ALLQKAAQMG STRTTPLPPT TDFERSHNTL TTTMASMMTS PSGFISSNNN NQVLFQDYNA 420 SGFNHHHGGG EAFDNTFSEL FRTNADTTSD KNKSGEGGGG REGLTRDFLG LRPLMSHNEI 480 LSFAGLGNCI NDAASDQLHP KPWQGTQVGS NKR

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence Send to blast

MTSKDMLLHQ QVQQQQEENM SNLTSSGDQA SVSSGNRTEA SGSNFFHHQQ QQEEQQQFFV  60
PEPQPQKKRR NQPGNPDPES EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL  120
PWKLKQRSNK EVIRKKVYVC PETSCVHHDP SRALGDLTGI KKHFSRKHGE KKWKCDKCSK  180
KYAVQSDCKA HSKTCGTKEY RCDCGTLFSR RDSYITHRAF CLALAEETAR EVVTPQDQNH  240
QPNPLMIHQS SHHHHQAQPN MNISSSSSSS HNIINTLHFE TNVNVTNNCE SSSNHPHTFP  300
MKIEQQQTGD QIINYHHHGV PPWLAPQPQD RTSSNPNPSN GGGGGGGLFS LAASPVMSAT  360
ALLQKAAQMG STRTTPLPPT TDFERSHNTL TTTMASMMTS PSGFISSNNN NQVLFQDYNA  420
SGFNHHHGGG EAFDNTFSEL FRTNADTTSD KNKSGEGGGG REGLTRDFLG LRPLMSHNEI  480
LSFAGLGNCI NDAASDQLHP KPWQGTQVGS NKR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-30	169	230	3	64	Zinc finger protein JACKDAW
5b3h_F	6e-30	169	230	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	135	KLKQRSNKEVIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009146443.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009146441.1	0.0	PREDICTED: protein indeterminate-domain 11-like isoform X1
Refseq	XP_009146442.1	0.0	PREDICTED: protein indeterminate-domain 11-like isoform X1
Refseq	XP_009146444.1	0.0	PREDICTED: protein indeterminate-domain 11-like isoform X1
Refseq	XP_009146445.1	0.0	PREDICTED: protein indeterminate-domain 11-like isoform X1
Swissprot	Q9LRW7	0.0	IDD11_ARATH; Protein indeterminate-domain 11
TrEMBL	A0A397ZDP5	0.0	A0A397ZDP5_BRACM; Uncharacterized protein
STRING	Bra027394.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	0.0	indeterminate(ID)-domain 11

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]