PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009146436.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 357aa MW: 40128 Da PI: 7.4222 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.9 | 2.3e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W++++++ g+ R++k+c++rw +yl XP_009146436.1 14 RGLWSPEEDEKLINYINTYGHGCWSSVPKHAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.1 | 5.4e-15 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++ +E l+++++ +lG++ W+ Ia++++ gRt++++k++w+ XP_009146436.1 67 RGSFSSQEAALIIELHSLLGNR-WAQIAKHLP-GRTDNEVKNFWN 109 899*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.8E-28 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.978 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.06E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.14E-13 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.869 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 8.8E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.60E-10 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIN TYGHGCWSSV PKHAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SSQEAALIIE LHSLLGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLMSHH 120 HHGHHYHISS MASLLTNLPY HNGFNSTNGG DEGSRFMSNI IITNTNPNFI TPSHLSLPSP 180 HVMAPLMFST SREGDFKFPT TTNTNQSHQD HNNLYNNLDI LSATPIINSH HHHYDNDSQL 240 PSLPDLPAST ICTYQETLQD CDDGNEVFVT PYNSNGDDPR SIPLVATKLL CEQVLEEKIL 300 SSSPITQDHG LLIPTKYNLQ MPGDHHNRVV SYINHMIIPS SSSSSPSPIS CGQYVIT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-32 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in anthers early during endothecial development, with maximal expression during pollen mitosis I and bicellular stages. {ECO:0000269|PubMed:17329564}. | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in flowers. {ECO:0000269|PubMed:12753590}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates lignified secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence (PubMed:12753590, PubMed:17147638, PubMed:17329564). May play a role in specifying early endothecial cell development by regulating a number of genes linked to secondary thickening such as NST1 and NST2. Acts upstream of the lignin biosynthesis pathway (PubMed:17329564). {ECO:0000269|PubMed:12753590, ECO:0000269|PubMed:17147638, ECO:0000269|PubMed:17329564}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009146436.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin. {ECO:0000269|PubMed:23410518}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519588 | 0.0 | AY519588.1 Arabidopsis thaliana MYB transcription factor (At3g13890) mRNA, complete cds. | |||
GenBank | DQ446661 | 0.0 | DQ446661.1 Arabidopsis thaliana clone pENTR221-At3g13890 myb family transcription factor (At3g13890) mRNA, complete cds. | |||
GenBank | DQ653083 | 0.0 | DQ653083.1 Arabidopsis thaliana clone 0000019124_0000013170 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009146436.1 | 0.0 | PREDICTED: transcription factor MYB26-like | ||||
Refseq | XP_009146437.1 | 0.0 | PREDICTED: transcription factor MYB26-like | ||||
Refseq | XP_018514268.1 | 0.0 | PREDICTED: transcription factor MYB26-like | ||||
Swissprot | Q9SPG3 | 1e-172 | MYB26_ARATH; Transcription factor MYB26 | ||||
TrEMBL | A0A397ZDN3 | 0.0 | A0A397ZDN3_BRACM; Uncharacterized protein | ||||
STRING | Bra027389.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12803 | 19 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.2 | 1e-166 | myb domain protein 26 |
Publications ? help Back to Top | |||
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